Hb_000574_290

Information

Type -
Description -
Location Contig574: 287691-288560
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_012067037.1
description PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5CUI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_290 0.0 - - PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
2 Hb_066206_010 0.0167712891 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000043_040 0.0822816685 - - CTV.19 [Citrus trifoliata]
4 Hb_003205_040 0.1185829697 - - epoxide hydrolase, putative [Ricinus communis]
5 Hb_085793_010 0.120216535 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
6 Hb_165100_010 0.2001167488 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_028248_010 0.2384139943 - - polyprotein [Oryza australiensis]
8 Hb_000612_050 0.2505285868 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
9 Hb_000832_350 0.2522713288 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_033908_010 0.2845514161 - - -
11 Hb_005465_050 0.287285618 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
12 Hb_105251_010 0.2873452581 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_003793_040 0.2873771895 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
14 Hb_001102_280 0.2874119694 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_031318_010 0.2874691845 - - -
16 Hb_152910_030 0.287469271 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
17 Hb_056506_090 0.2874771609 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_000127_150 0.2874779647 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
19 Hb_015866_010 0.2874817776 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
20 Hb_001833_030 0.287487079 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_000574_290 Hb_000574_290 Hb_066206_010 Hb_066206_010 Hb_000574_290--Hb_066206_010 Hb_000043_040 Hb_000043_040 Hb_000574_290--Hb_000043_040 Hb_003205_040 Hb_003205_040 Hb_000574_290--Hb_003205_040 Hb_085793_010 Hb_085793_010 Hb_000574_290--Hb_085793_010 Hb_165100_010 Hb_165100_010 Hb_000574_290--Hb_165100_010 Hb_028248_010 Hb_028248_010 Hb_000574_290--Hb_028248_010 Hb_066206_010--Hb_000043_040 Hb_066206_010--Hb_003205_040 Hb_066206_010--Hb_085793_010 Hb_066206_010--Hb_165100_010 Hb_066206_010--Hb_028248_010 Hb_000043_040--Hb_003205_040 Hb_000043_040--Hb_085793_010 Hb_000043_040--Hb_165100_010 Hb_000043_040--Hb_028248_010 Hb_003205_040--Hb_085793_010 Hb_003205_040--Hb_165100_010 Hb_003205_040--Hb_028248_010 Hb_085793_010--Hb_165100_010 Hb_085793_010--Hb_028248_010 Hb_165100_010--Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0284407 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.044469 0.109887

CAGE analysis