Hb_000574_360

Information

Type -
Description -
Location Contig574: 328821-329045
Sequence    

Annotation

kegg
ID vvi:100258664
description formamidopyrimidine-DNA glycosylase-like
nr
ID XP_002268184.2
description PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Vitis vinifera]
swissprot
ID O80358
description Formamidopyrimidine-DNA glycosylase OS=Arabidopsis thaliana GN=FPG1 PE=1 SV=1
trembl
ID D7TDT6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0043g00730 PE=4 SV=1
Gene Ontology
ID GO:0003684
description formamidopyrimidine-dna glycosylase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_360 0.0 - - PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Vitis vinifera]
2 Hb_004884_010 0.1671797195 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
3 Hb_002851_080 0.1688467915 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
4 Hb_006787_060 0.1763342028 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
5 Hb_002022_070 0.1797417074 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
6 Hb_003929_140 0.1811762201 - - DNA binding protein, putative [Ricinus communis]
7 Hb_001440_040 0.1819353662 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
8 Hb_133047_010 0.1836965621 - - xanthine dehydrogenase, putative [Ricinus communis]
9 Hb_000577_030 0.1848600668 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
10 Hb_002392_030 0.1868644038 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
11 Hb_105641_010 0.1872295329 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
12 Hb_002081_010 0.1900487676 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000406_020 0.1907552408 - - -
14 Hb_003059_010 0.191559805 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
15 Hb_000345_150 0.1921531365 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
16 Hb_000032_470 0.1926190544 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
17 Hb_007904_080 0.1932796527 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
18 Hb_032920_130 0.193303769 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
19 Hb_000028_510 0.1936725471 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
20 Hb_000465_480 0.1942120208 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000574_360 Hb_000574_360 Hb_004884_010 Hb_004884_010 Hb_000574_360--Hb_004884_010 Hb_002851_080 Hb_002851_080 Hb_000574_360--Hb_002851_080 Hb_006787_060 Hb_006787_060 Hb_000574_360--Hb_006787_060 Hb_002022_070 Hb_002022_070 Hb_000574_360--Hb_002022_070 Hb_003929_140 Hb_003929_140 Hb_000574_360--Hb_003929_140 Hb_001440_040 Hb_001440_040 Hb_000574_360--Hb_001440_040 Hb_133047_010 Hb_133047_010 Hb_004884_010--Hb_133047_010 Hb_034243_020 Hb_034243_020 Hb_004884_010--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_004884_010--Hb_010315_090 Hb_004884_010--Hb_002022_070 Hb_148909_030 Hb_148909_030 Hb_004884_010--Hb_148909_030 Hb_004543_030 Hb_004543_030 Hb_004884_010--Hb_004543_030 Hb_001006_340 Hb_001006_340 Hb_002851_080--Hb_001006_340 Hb_008114_050 Hb_008114_050 Hb_002851_080--Hb_008114_050 Hb_012146_050 Hb_012146_050 Hb_002851_080--Hb_012146_050 Hb_001431_120 Hb_001431_120 Hb_002851_080--Hb_001431_120 Hb_000256_020 Hb_000256_020 Hb_002851_080--Hb_000256_020 Hb_004411_030 Hb_004411_030 Hb_002851_080--Hb_004411_030 Hb_001231_030 Hb_001231_030 Hb_006787_060--Hb_001231_030 Hb_004629_010 Hb_004629_010 Hb_006787_060--Hb_004629_010 Hb_032920_130 Hb_032920_130 Hb_006787_060--Hb_032920_130 Hb_006787_060--Hb_133047_010 Hb_000935_090 Hb_000935_090 Hb_006787_060--Hb_000935_090 Hb_006787_060--Hb_002022_070 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_000661_020 Hb_000661_020 Hb_003929_140--Hb_000661_020 Hb_003929_140--Hb_002022_070 Hb_003929_140--Hb_000028_510 Hb_003929_140--Hb_004629_010 Hb_000753_100 Hb_000753_100 Hb_003929_140--Hb_000753_100 Hb_003929_140--Hb_001231_030 Hb_001235_230 Hb_001235_230 Hb_001440_040--Hb_001235_230 Hb_001401_060 Hb_001401_060 Hb_001440_040--Hb_001401_060 Hb_001440_040--Hb_032920_130 Hb_005488_150 Hb_005488_150 Hb_001440_040--Hb_005488_150 Hb_002044_170 Hb_002044_170 Hb_001440_040--Hb_002044_170 Hb_000069_320 Hb_000069_320 Hb_001440_040--Hb_000069_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.30002 12.527 9.31491 2.06574 11.5426 13.5524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79882 0 10.1653 7.10274 8.04864

CAGE analysis