Hb_000574_370

Information

Type -
Description -
Location Contig574: 330473-333918
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G1793001
description hypothetical protein
nr
ID XP_012073135.1
description PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06109 PE=4 SV=1
Gene Ontology
ID GO:0016787
description formamidopyrimidine-dna glycosylase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49566: 330007-332666 , PASA_asmbl_49567: 331281-331786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_370 0.0 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
2 Hb_000139_510 0.1252910023 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
3 Hb_002603_010 0.1286174455 - - unnamed protein product [Vitis vinifera]
4 Hb_001268_300 0.1332918545 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001488_280 0.1336753764 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
6 Hb_009193_060 0.133840324 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
7 Hb_002833_020 0.1353837138 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_002888_040 0.1359973758 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
9 Hb_012033_010 0.1379037388 - - PREDICTED: histone H1.2-like [Jatropha curcas]
10 Hb_004096_220 0.1403188222 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
11 Hb_001496_120 0.1408276675 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
12 Hb_153257_010 0.1421736984 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
13 Hb_001307_200 0.1460334719 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
14 Hb_001821_060 0.1465832758 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
15 Hb_000417_280 0.1472037085 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003106_110 0.1483280778 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
17 Hb_017559_010 0.1494028578 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
18 Hb_073973_020 0.1508384964 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
19 Hb_083078_010 0.1513408986 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
20 Hb_002093_050 0.151846673 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]

Gene co-expression network

sample Hb_000574_370 Hb_000574_370 Hb_000139_510 Hb_000139_510 Hb_000574_370--Hb_000139_510 Hb_002603_010 Hb_002603_010 Hb_000574_370--Hb_002603_010 Hb_001268_300 Hb_001268_300 Hb_000574_370--Hb_001268_300 Hb_001488_280 Hb_001488_280 Hb_000574_370--Hb_001488_280 Hb_009193_060 Hb_009193_060 Hb_000574_370--Hb_009193_060 Hb_002833_020 Hb_002833_020 Hb_000574_370--Hb_002833_020 Hb_153257_010 Hb_153257_010 Hb_000139_510--Hb_153257_010 Hb_000139_510--Hb_002833_020 Hb_004864_020 Hb_004864_020 Hb_000139_510--Hb_004864_020 Hb_003092_050 Hb_003092_050 Hb_000139_510--Hb_003092_050 Hb_000085_380 Hb_000085_380 Hb_000139_510--Hb_000085_380 Hb_017559_010 Hb_017559_010 Hb_002603_010--Hb_017559_010 Hb_000254_010 Hb_000254_010 Hb_002603_010--Hb_000254_010 Hb_002943_010 Hb_002943_010 Hb_002603_010--Hb_002943_010 Hb_000473_030 Hb_000473_030 Hb_002603_010--Hb_000473_030 Hb_033234_010 Hb_033234_010 Hb_002603_010--Hb_033234_010 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_000120_310 Hb_000120_310 Hb_001488_280--Hb_000120_310 Hb_009898_030 Hb_009898_030 Hb_001488_280--Hb_009898_030 Hb_001488_280--Hb_002833_020 Hb_001488_280--Hb_000417_280 Hb_005880_010 Hb_005880_010 Hb_001488_280--Hb_005880_010 Hb_009193_060--Hb_000417_280 Hb_003106_110 Hb_003106_110 Hb_009193_060--Hb_003106_110 Hb_001008_110 Hb_001008_110 Hb_009193_060--Hb_001008_110 Hb_011537_020 Hb_011537_020 Hb_009193_060--Hb_011537_020 Hb_004096_220 Hb_004096_220 Hb_009193_060--Hb_004096_220 Hb_002833_020--Hb_001008_110 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_002833_020--Hb_000085_380 Hb_002833_020--Hb_000120_310 Hb_002833_020--Hb_042202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.243774 1.29394 1.28841 1.04226 0.220713 0.195623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0243446 0.137258 1.81695 1.42652

CAGE analysis