Hb_000574_390

Information

Type transcription factor
Description TF Family: FAR1
Location Contig574: 344597-351999
Sequence    

Annotation

kegg
ID vvi:100853055
description protein FAR1-RELATED SEQUENCE 6-like
nr
ID XP_012073140.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
swissprot
ID Q9SSQ4
description Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1
trembl
ID A0A067KLC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06112 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49576: 343024-344792 , PASA_asmbl_49577: 345058-345307 , PASA_asmbl_49578: 345323-345594 , PASA_asmbl_49580: 347572-348889 , PASA_asmbl_49581: 349667-349909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_390 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
2 Hb_013405_030 0.0652297477 - - conserved hypothetical protein [Ricinus communis]
3 Hb_015198_020 0.0654163584 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000631_080 0.0655477776 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
5 Hb_086639_040 0.0703695779 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
6 Hb_011242_040 0.0743328062 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
7 Hb_000707_050 0.0749959031 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
8 Hb_000047_030 0.0757922954 - - tfiif-alpha, putative [Ricinus communis]
9 Hb_003142_020 0.0775856264 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
10 Hb_001007_060 0.0816069492 - - Transcriptional corepressor SEUSS [Glycine soja]
11 Hb_000928_210 0.0859012354 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
12 Hb_000206_210 0.0908855324 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
13 Hb_007632_220 0.0910030955 - - RNA-binding protein, putative [Ricinus communis]
14 Hb_002725_120 0.0913901831 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
15 Hb_001019_190 0.0921848747 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006915_050 0.0927039543 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
17 Hb_000236_070 0.0950931697 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005496_130 0.0953878897 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
19 Hb_002685_210 0.0954841306 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
20 Hb_009767_110 0.0967649714 - - -

Gene co-expression network

sample Hb_000574_390 Hb_000574_390 Hb_013405_030 Hb_013405_030 Hb_000574_390--Hb_013405_030 Hb_015198_020 Hb_015198_020 Hb_000574_390--Hb_015198_020 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_011242_040 Hb_011242_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_000047_030 Hb_000047_030 Hb_013405_030--Hb_000047_030 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_013405_030--Hb_015198_020 Hb_015198_020--Hb_000047_030 Hb_015198_020--Hb_011242_040 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160 Hb_000631_080--Hb_086639_040 Hb_002685_210 Hb_002685_210 Hb_000631_080--Hb_002685_210 Hb_000861_020 Hb_000861_020 Hb_000631_080--Hb_000861_020 Hb_015941_020 Hb_015941_020 Hb_000631_080--Hb_015941_020 Hb_004225_050 Hb_004225_050 Hb_000631_080--Hb_004225_050 Hb_086639_040--Hb_000707_050 Hb_005496_130 Hb_005496_130 Hb_086639_040--Hb_005496_130 Hb_003688_150 Hb_003688_150 Hb_086639_040--Hb_003688_150 Hb_103118_010 Hb_103118_010 Hb_086639_040--Hb_103118_010 Hb_001140_220 Hb_001140_220 Hb_011242_040--Hb_001140_220 Hb_011242_040--Hb_000047_030 Hb_001258_040 Hb_001258_040 Hb_011242_040--Hb_001258_040 Hb_000258_270 Hb_000258_270 Hb_011242_040--Hb_000258_270 Hb_000739_310 Hb_000739_310 Hb_000707_050--Hb_000739_310 Hb_000832_020 Hb_000832_020 Hb_000707_050--Hb_000832_020 Hb_006711_100 Hb_006711_100 Hb_000707_050--Hb_006711_100 Hb_000707_050--Hb_013405_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60762 1.98641 0.972669 1.69736 3.70684 3.78809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63263 3.63998 5.68788 2.09121 4.13894

CAGE analysis