Hb_000574_450

Information

Type -
Description -
Location Contig574: 399666-402996
Sequence    

Annotation

kegg
ID tcc:TCM_027264
description Signal recognition particle, SRP54 subunit protein
nr
ID XP_012073150.1
description PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
swissprot
ID P49972
description Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067KLN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06118 PE=3 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle 54 kda protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49597: 399669-402899 , PASA_asmbl_49598: 399669-402857
cDNA
(Sanger)
(ID:Location)		 033_B07.ab1: 402090-402899 , 046_G06.ab1: 402000-402899 , 048_K08.ab1: 401679-402857

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_450 0.0 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
2 Hb_029243_030 0.0463631453 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
3 Hb_149985_010 0.04910598 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
4 Hb_000487_270 0.053558764 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
5 Hb_010515_020 0.0541928327 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
6 Hb_006452_120 0.0565369433 - - PREDICTED: protein FAM188A [Jatropha curcas]
7 Hb_001500_140 0.0590305821 - - pelota, putative [Ricinus communis]
8 Hb_001789_150 0.063270291 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
9 Hb_002989_020 0.064110436 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
10 Hb_008748_030 0.065503472 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005054_110 0.0664556959 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
12 Hb_000012_310 0.0668512214 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
13 Hb_004990_010 0.0673999526 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
14 Hb_011063_050 0.0676724014 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
15 Hb_000778_010 0.0682400226 - - hypothetical protein [Bacillus subtilis]
16 Hb_093458_040 0.0694718761 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_001679_050 0.0695158624 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
18 Hb_023001_040 0.0710460314 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
19 Hb_000260_350 0.071381226 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004030_080 0.0722303828 - - hypothetical protein JCGZ_25110 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_450 Hb_000574_450 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_010515_020 Hb_010515_020 Hb_000574_450--Hb_010515_020 Hb_006452_120 Hb_006452_120 Hb_000574_450--Hb_006452_120 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_001999_310 Hb_001999_310 Hb_029243_030--Hb_001999_310 Hb_029243_030--Hb_010515_020 Hb_029243_030--Hb_001500_140 Hb_027073_020 Hb_027073_020 Hb_029243_030--Hb_027073_020 Hb_002989_020 Hb_002989_020 Hb_029243_030--Hb_002989_020 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_004990_010 Hb_004990_010 Hb_000487_270--Hb_004990_010 Hb_000487_270--Hb_010515_020 Hb_008279_040 Hb_008279_040 Hb_000487_270--Hb_008279_040 Hb_000208_280 Hb_000208_280 Hb_000487_270--Hb_000208_280 Hb_001679_050 Hb_001679_050 Hb_000487_270--Hb_001679_050 Hb_010515_020--Hb_006452_120 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_010142_020 Hb_010142_020 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_001500_140--Hb_001999_310 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1478 16.135 13.3529 24.6768 10.2753 15.0246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0447 18.4822 18.3751 20.3761 18.6391

CAGE analysis