Hb_000574_480

Information

Type -
Description -
Location Contig574: 417048-422448
Sequence    

Annotation

kegg
ID rcu:RCOM_0901070
description hypothetical protein
nr
ID XP_012073154.1
description PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49600: 417072-422525
cDNA
(Sanger)
(ID:Location)		 031_E15.ab1: 417635-422525

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_480 0.0 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
2 Hb_003656_070 0.049988186 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
3 Hb_001998_050 0.0565364633 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
4 Hb_002963_010 0.0575763449 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
5 Hb_008173_090 0.0592876534 - - glutathione peroxidase, putative [Ricinus communis]
6 Hb_012675_060 0.060464757 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
7 Hb_000173_220 0.0612241401 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
8 Hb_012753_160 0.0663673572 - - ara4-interacting protein, putative [Ricinus communis]
9 Hb_000363_480 0.0678066073 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
10 Hb_159809_020 0.0678339984 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_004586_320 0.0683896383 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
12 Hb_000111_330 0.0689746809 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
13 Hb_007479_020 0.0716565154 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
14 Hb_000201_120 0.0726674424 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
15 Hb_000009_460 0.0759424554 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000920_110 0.07629555 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
17 Hb_000283_110 0.0763015183 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
18 Hb_001616_040 0.0768052649 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
19 Hb_009051_030 0.076894958 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
20 Hb_000834_270 0.0772151322 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_480 Hb_000574_480 Hb_003656_070 Hb_003656_070 Hb_000574_480--Hb_003656_070 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_012675_060 Hb_012675_060 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_001998_050--Hb_004586_320 Hb_001998_050--Hb_012675_060 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_012675_060--Hb_000834_270 Hb_012675_060--Hb_004586_320 Hb_012675_060--Hb_000173_220 Hb_002027_210 Hb_002027_210 Hb_000173_220--Hb_002027_210 Hb_001191_090 Hb_001191_090 Hb_000173_220--Hb_001191_090 Hb_017948_010 Hb_017948_010 Hb_000173_220--Hb_017948_010 Hb_003455_040 Hb_003455_040 Hb_000173_220--Hb_003455_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2279 12.5668 10.3917 17.3974 19.7682 22.9625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9658 60.1185 34.8748 17.3817 10.2839

CAGE analysis