Hb_000574_530

Information

Type -
Description -
Location Contig574: 458364-470209
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02640g
description embryo defective 14 family protein
nr
ID XP_012073164.1
description PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
swissprot
ID Q99PV0
description Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2
trembl
ID A0A067KXR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06126 PE=4 SV=1
Gene Ontology
ID GO:0005681
description pre-mrna-processing-splicing factor 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49605: 458433-470275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_530 0.0 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
2 Hb_007632_010 0.0707016349 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
3 Hb_001124_050 0.0711557359 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
4 Hb_171554_040 0.0762847666 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
5 Hb_006531_020 0.0767260477 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
6 Hb_009486_090 0.0792053702 - - RNA binding protein, putative [Ricinus communis]
7 Hb_002521_020 0.0811145835 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
8 Hb_005186_040 0.0829488203 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
9 Hb_033799_010 0.0847584574 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
10 Hb_000009_410 0.0867523191 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
11 Hb_002639_080 0.0882420494 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
12 Hb_004208_050 0.0907992552 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
13 Hb_006031_010 0.0911791611 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
14 Hb_185830_070 0.0921124489 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
15 Hb_001377_100 0.0928735208 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
16 Hb_023344_160 0.0938898083 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
17 Hb_000589_380 0.0939669334 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
18 Hb_003216_090 0.0941294587 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
19 Hb_000083_270 0.0943439444 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
20 Hb_001662_180 0.0962624993 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]

Gene co-expression network

sample Hb_000574_530 Hb_000574_530 Hb_007632_010 Hb_007632_010 Hb_000574_530--Hb_007632_010 Hb_001124_050 Hb_001124_050 Hb_000574_530--Hb_001124_050 Hb_171554_040 Hb_171554_040 Hb_000574_530--Hb_171554_040 Hb_006531_020 Hb_006531_020 Hb_000574_530--Hb_006531_020 Hb_009486_090 Hb_009486_090 Hb_000574_530--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_000574_530--Hb_002521_020 Hb_002639_080 Hb_002639_080 Hb_007632_010--Hb_002639_080 Hb_000720_130 Hb_000720_130 Hb_007632_010--Hb_000720_130 Hb_007576_210 Hb_007576_210 Hb_007632_010--Hb_007576_210 Hb_009486_170 Hb_009486_170 Hb_007632_010--Hb_009486_170 Hb_002333_050 Hb_002333_050 Hb_007632_010--Hb_002333_050 Hb_001124_050--Hb_009486_170 Hb_001124_050--Hb_009486_090 Hb_001124_050--Hb_002521_020 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170 Hb_033799_010 Hb_033799_010 Hb_171554_040--Hb_033799_010 Hb_171554_040--Hb_001124_050 Hb_007012_040 Hb_007012_040 Hb_171554_040--Hb_007012_040 Hb_005408_030 Hb_005408_030 Hb_171554_040--Hb_005408_030 Hb_000170_100 Hb_000170_100 Hb_171554_040--Hb_000170_100 Hb_001628_070 Hb_001628_070 Hb_006531_020--Hb_001628_070 Hb_006531_020--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_006531_020--Hb_000331_580 Hb_000009_410 Hb_000009_410 Hb_006531_020--Hb_000009_410 Hb_004705_020 Hb_004705_020 Hb_006531_020--Hb_004705_020 Hb_123531_010 Hb_123531_010 Hb_006531_020--Hb_123531_010 Hb_009486_090--Hb_006031_010 Hb_001377_100 Hb_001377_100 Hb_009486_090--Hb_001377_100 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_009486_090--Hb_001951_170 Hb_009486_090--Hb_009486_170 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_005186_040 Hb_005186_040 Hb_002521_020--Hb_005186_040 Hb_002521_020--Hb_001133_030 Hb_002521_020--Hb_009486_170 Hb_002521_020--Hb_001377_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.29604 33.7964 10.4948 16.5698 14.476 16.4738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.87338 7.63437 17.2512 34.1563 31.6797

CAGE analysis