Hb_000574_540

Information

Type -
Description -
Location Contig574: 470557-477997
Sequence    

Annotation

kegg
ID rcu:RCOM_0900700
description ATP binding protein, putative
nr
ID XP_002517653.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LSC2
description PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=2 SV=1
trembl
ID B9RV84
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0900700 PE=3 SV=1
Gene Ontology
ID GO:0004674
description pti1-like tyrosine-protein kinase at3g15890

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49606: 470607-474239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_540 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000092_020 0.0633355252 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
3 Hb_001638_270 0.0671347479 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
4 Hb_000003_190 0.0674242051 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
5 Hb_000366_120 0.0722303035 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
6 Hb_002872_040 0.0726028428 - - pumilio, putative [Ricinus communis]
7 Hb_001080_230 0.0737711357 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
8 Hb_007254_070 0.0743383517 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
9 Hb_001021_170 0.074606256 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
10 Hb_011491_010 0.0749370107 - - Protein YME1, putative [Ricinus communis]
11 Hb_004355_020 0.0755170461 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
12 Hb_154114_010 0.077691027 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
13 Hb_000395_130 0.0782726643 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
14 Hb_002255_030 0.0789037088 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
15 Hb_000594_040 0.0789151241 - - hypothetical protein L484_013922 [Morus notabilis]
16 Hb_001114_140 0.0797951529 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
17 Hb_004128_050 0.080907958 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_011671_430 0.0818702056 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
19 Hb_000190_120 0.0826234621 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
20 Hb_000035_290 0.0829156559 - - RNA recognition motif-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000574_540 Hb_000574_540 Hb_000092_020 Hb_000092_020 Hb_000574_540--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_000574_540--Hb_001638_270 Hb_000003_190 Hb_000003_190 Hb_000574_540--Hb_000003_190 Hb_000366_120 Hb_000366_120 Hb_000574_540--Hb_000366_120 Hb_002872_040 Hb_002872_040 Hb_000574_540--Hb_002872_040 Hb_001080_230 Hb_001080_230 Hb_000574_540--Hb_001080_230 Hb_000395_130 Hb_000395_130 Hb_000092_020--Hb_000395_130 Hb_000092_020--Hb_001080_230 Hb_000092_020--Hb_000003_190 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010 Hb_167498_010 Hb_167498_010 Hb_001638_270--Hb_167498_010 Hb_003158_010 Hb_003158_010 Hb_001638_270--Hb_003158_010 Hb_001638_270--Hb_000395_130 Hb_001638_270--Hb_000003_190 Hb_001638_270--Hb_000092_020 Hb_000003_190--Hb_001080_230 Hb_003470_080 Hb_003470_080 Hb_000003_190--Hb_003470_080 Hb_000003_190--Hb_002872_040 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_007576_110 Hb_007576_110 Hb_000366_120--Hb_007576_110 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_001409_020 Hb_001409_020 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310 Hb_000243_250 Hb_000243_250 Hb_002872_040--Hb_000243_250 Hb_002872_040--Hb_001080_230 Hb_002872_040--Hb_000092_020 Hb_002872_040--Hb_001638_270 Hb_001080_230--Hb_000395_130 Hb_001080_230--Hb_003470_080 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0956 36.7749 13.1146 15.6564 27.394 26.6446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6597 17.2383 18.4167 21.8768 15.3267

CAGE analysis