Hb_000574_550

Information

Type -
Description -
Location Contig574: 483858-484642
Sequence    

Annotation

kegg
ID rcu:RCOM_0900640
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_012073166.1
description PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
swissprot
ID Q9XI37
description SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=2 SV=1
trembl
ID A0A067KPY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06129 PE=4 SV=1
Gene Ontology
ID GO:0005737
description snf1-related protein kinase regulatory subunit gamma-like pv42a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_550 0.0 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
2 Hb_187513_010 0.1382471846 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
3 Hb_001652_110 0.1388722583 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
4 Hb_000065_050 0.1507369781 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_002571_090 0.1512893896 - - -
6 Hb_003226_290 0.1647834265 - - catalytic, putative [Ricinus communis]
7 Hb_000296_060 0.1801110435 - - -
8 Hb_005007_040 0.2225721568 - - hypothetical protein VITISV_032357 [Vitis vinifera]
9 Hb_069783_020 0.2361985259 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
10 Hb_012424_010 0.2431034338 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_000205_340 0.2434550074 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
12 Hb_000446_060 0.2461710063 - - -
13 Hb_162126_010 0.2502672115 - - -
14 Hb_000430_010 0.251759776 - - -
15 Hb_000276_050 0.253445467 - - -
16 Hb_125847_010 0.254060335 - - -
17 Hb_008246_050 0.2550763102 - - -
18 Hb_005799_040 0.2550851394 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
19 Hb_048874_010 0.256354677 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
20 Hb_169574_010 0.256908406 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000574_550 Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_000574_550--Hb_187513_010 Hb_001652_110 Hb_001652_110 Hb_000574_550--Hb_001652_110 Hb_000065_050 Hb_000065_050 Hb_000574_550--Hb_000065_050 Hb_002571_090 Hb_002571_090 Hb_000574_550--Hb_002571_090 Hb_003226_290 Hb_003226_290 Hb_000574_550--Hb_003226_290 Hb_000296_060 Hb_000296_060 Hb_000574_550--Hb_000296_060 Hb_069783_020 Hb_069783_020 Hb_187513_010--Hb_069783_020 Hb_187513_010--Hb_000296_060 Hb_187513_010--Hb_002571_090 Hb_012424_010 Hb_012424_010 Hb_187513_010--Hb_012424_010 Hb_003551_030 Hb_003551_030 Hb_187513_010--Hb_003551_030 Hb_001652_110--Hb_000065_050 Hb_005007_040 Hb_005007_040 Hb_001652_110--Hb_005007_040 Hb_012071_010 Hb_012071_010 Hb_001652_110--Hb_012071_010 Hb_006683_010 Hb_006683_010 Hb_001652_110--Hb_006683_010 Hb_012295_020 Hb_012295_020 Hb_001652_110--Hb_012295_020 Hb_000065_050--Hb_012071_010 Hb_000065_050--Hb_012295_020 Hb_000065_050--Hb_002571_090 Hb_032531_010 Hb_032531_010 Hb_000065_050--Hb_032531_010 Hb_000205_340 Hb_000205_340 Hb_002571_090--Hb_000205_340 Hb_002571_090--Hb_000296_060 Hb_002571_090--Hb_003551_030 Hb_003226_290--Hb_187513_010 Hb_005285_010 Hb_005285_010 Hb_003226_290--Hb_005285_010 Hb_162126_010 Hb_162126_010 Hb_003226_290--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_003226_290--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_003226_290--Hb_125847_010 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_003551_030 Hb_000296_060--Hb_000205_340 Hb_000296_060--Hb_012424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.8917 1.00268 0.393018

CAGE analysis