Hb_000575_010

Information

Type -
Description -
Location Contig575: 11257-14162
Sequence    

Annotation

kegg
ID mdm:103454030
description uncharacterized LOC103454030
nr
ID XP_008391838.1
description PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
swissprot
ID -
description -
trembl
ID C5WNV7
description Putative uncharacterized protein Sb01g011130 OS=Sorghum bicolor GN=Sb01g011130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_010 0.0 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
2 Hb_000616_060 0.0033801853 - - -
3 Hb_000891_060 0.0081576482 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
4 Hb_002282_030 0.0162285038 - - -
5 Hb_009543_040 0.0431002983 - - -
6 Hb_001157_130 0.0564574029 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
7 Hb_132438_010 0.0674970376 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_000751_210 0.0825114997 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
9 Hb_031862_090 0.0860719125 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
10 Hb_005203_010 0.0873324686 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
11 Hb_000155_270 0.0875343973 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
12 Hb_060272_010 0.0923233629 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
13 Hb_027445_080 0.099558881 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
14 Hb_007850_040 0.1052484336 - - conserved hypothetical protein [Ricinus communis]
15 Hb_017866_010 0.1063427558 - - kinase family protein [Populus trichocarpa]
16 Hb_002762_070 0.1107328362 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
17 Hb_105446_010 0.1221231424 - - -
18 Hb_004724_070 0.1247342293 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
19 Hb_006268_010 0.1265699539 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
20 Hb_004837_170 0.1284519908 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]

Gene co-expression network

sample Hb_000575_010 Hb_000575_010 Hb_000616_060 Hb_000616_060 Hb_000575_010--Hb_000616_060 Hb_000891_060 Hb_000891_060 Hb_000575_010--Hb_000891_060 Hb_002282_030 Hb_002282_030 Hb_000575_010--Hb_002282_030 Hb_009543_040 Hb_009543_040 Hb_000575_010--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_000575_010--Hb_001157_130 Hb_132438_010 Hb_132438_010 Hb_000575_010--Hb_132438_010 Hb_000616_060--Hb_000891_060 Hb_000616_060--Hb_002282_030 Hb_000616_060--Hb_009543_040 Hb_000616_060--Hb_001157_130 Hb_000616_060--Hb_132438_010 Hb_000891_060--Hb_002282_030 Hb_000891_060--Hb_009543_040 Hb_000891_060--Hb_001157_130 Hb_000891_060--Hb_132438_010 Hb_002282_030--Hb_009543_040 Hb_002282_030--Hb_001157_130 Hb_031862_090 Hb_031862_090 Hb_002282_030--Hb_031862_090 Hb_009543_040--Hb_132438_010 Hb_000751_210 Hb_000751_210 Hb_009543_040--Hb_000751_210 Hb_009543_040--Hb_001157_130 Hb_060272_010 Hb_060272_010 Hb_001157_130--Hb_060272_010 Hb_001157_130--Hb_132438_010 Hb_000155_270 Hb_000155_270 Hb_001157_130--Hb_000155_270 Hb_132438_010--Hb_000751_210 Hb_017866_010 Hb_017866_010 Hb_132438_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_132438_010--Hb_105446_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0159497 0 0.0160597 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0138341 0

CAGE analysis