Hb_000575_030

Information

Type -
Description -
Location Contig575: 65947-75053
Sequence    

Annotation

kegg
ID mdm:103409367
description copper-transporting ATPase PAA1, chloroplastic-like
nr
ID CBI32958.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8Y8Q5
description Calcium-transporting ATPase lmo0841 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo0841 PE=1 SV=1
trembl
ID D7TR35
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00330 PE=3 SV=1
Gene Ontology
ID GO:0009570
description copper-transporting atpase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49622: 44163-74877 , PASA_asmbl_49623: 73953-74303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_008062_040 0.1098885572 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
3 Hb_003607_050 0.1203970849 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
4 Hb_000072_070 0.1330914825 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
5 Hb_000317_490 0.1383330078 - - Gibberellin receptor GID1, putative [Ricinus communis]
6 Hb_004195_270 0.1389388456 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
7 Hb_011316_100 0.1436006307 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
8 Hb_003749_010 0.1457070586 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002183_070 0.1458030012 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
10 Hb_001085_050 0.1493487379 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
11 Hb_001983_020 0.1511527531 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
12 Hb_000603_230 0.1532101209 - - copper-transporting atpase paa1, putative [Ricinus communis]
13 Hb_001922_170 0.1534537653 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
14 Hb_000345_390 0.1538776414 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
15 Hb_001604_060 0.1546657194 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
16 Hb_002374_570 0.1562960266 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
17 Hb_002490_020 0.157733145 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
18 Hb_000390_110 0.157909793 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
19 Hb_000887_020 0.1601570024 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
20 Hb_010106_010 0.1605615973 - - PREDICTED: cucumisin-like [Populus euphratica]

Gene co-expression network

sample Hb_000575_030 Hb_000575_030 Hb_008062_040 Hb_008062_040 Hb_000575_030--Hb_008062_040 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_000072_070 Hb_000072_070 Hb_000575_030--Hb_000072_070 Hb_000317_490 Hb_000317_490 Hb_000575_030--Hb_000317_490 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_011316_100 Hb_011316_100 Hb_000575_030--Hb_011316_100 Hb_001085_050 Hb_001085_050 Hb_008062_040--Hb_001085_050 Hb_008062_040--Hb_000072_070 Hb_008062_040--Hb_000317_490 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250 Hb_003125_190 Hb_003125_190 Hb_003607_050--Hb_003125_190 Hb_004934_110 Hb_004934_110 Hb_003607_050--Hb_004934_110 Hb_010106_010 Hb_010106_010 Hb_003607_050--Hb_010106_010 Hb_000887_020 Hb_000887_020 Hb_003607_050--Hb_000887_020 Hb_139518_030 Hb_139518_030 Hb_003607_050--Hb_139518_030 Hb_003749_010 Hb_003749_010 Hb_003607_050--Hb_003749_010 Hb_000072_070--Hb_011316_100 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_000072_070--Hb_001085_050 Hb_000032_440 Hb_000032_440 Hb_000317_490--Hb_000032_440 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_002183_070 Hb_002183_070 Hb_000317_490--Hb_002183_070 Hb_000317_490--Hb_011316_100 Hb_000317_490--Hb_000072_070 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6449 4.83719 21.0693 10.7537 9.68209 11.068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.0588 18.2288 14.4331 4.70071 20.3736

CAGE analysis