Hb_000575_040

Information

Type -
Description -
Location Contig575: 78795-82844
Sequence    

Annotation

kegg
ID rcu:RCOM_0460560
description serine/arginine rich splicing factor, putative
nr
ID XP_012081226.1
description PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
swissprot
ID Q9FMG4
description Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1
trembl
ID A0A067KEL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17056 PE=4 SV=1
Gene Ontology
ID GO:0005829
description serine arginine-rich splicing factor sc35-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49624: 81304-81702 , PASA_asmbl_49625: 82190-82847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_040 0.0 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
2 Hb_001089_110 0.0630787064 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000417_130 0.0640159005 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
4 Hb_000331_110 0.0680220395 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
5 Hb_063716_100 0.0694920378 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
6 Hb_030736_100 0.0699399618 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009545_080 0.0701315615 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
8 Hb_000883_020 0.0713446694 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
9 Hb_079526_030 0.071944442 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
10 Hb_000935_010 0.0727098784 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
11 Hb_001357_350 0.0781036537 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002684_040 0.0791261537 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
13 Hb_002876_230 0.0792748919 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
14 Hb_001357_250 0.079535077 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
15 Hb_000205_190 0.0798158032 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_001981_030 0.0801645484 - - nuclear acid binding protein, putative [Ricinus communis]
17 Hb_005144_090 0.0804979238 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
18 Hb_029879_010 0.0809346981 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
19 Hb_001012_010 0.0819182605 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
20 Hb_032986_010 0.0821136557 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]

Gene co-expression network

sample Hb_000575_040 Hb_000575_040 Hb_001089_110 Hb_001089_110 Hb_000575_040--Hb_001089_110 Hb_000417_130 Hb_000417_130 Hb_000575_040--Hb_000417_130 Hb_000331_110 Hb_000331_110 Hb_000575_040--Hb_000331_110 Hb_063716_100 Hb_063716_100 Hb_000575_040--Hb_063716_100 Hb_030736_100 Hb_030736_100 Hb_000575_040--Hb_030736_100 Hb_009545_080 Hb_009545_080 Hb_000575_040--Hb_009545_080 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_001089_110--Hb_000331_110 Hb_123915_040 Hb_123915_040 Hb_000417_130--Hb_123915_040 Hb_001357_250 Hb_001357_250 Hb_000417_130--Hb_001357_250 Hb_001357_350 Hb_001357_350 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_000417_130--Hb_063716_100 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180 Hb_003939_050 Hb_003939_050 Hb_030736_100--Hb_003939_050 Hb_003025_110 Hb_003025_110 Hb_030736_100--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_030736_100--Hb_000883_020 Hb_002271_030 Hb_002271_030 Hb_030736_100--Hb_002271_030 Hb_000879_200 Hb_000879_200 Hb_030736_100--Hb_000879_200 Hb_009545_080--Hb_000883_020 Hb_002997_080 Hb_002997_080 Hb_009545_080--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_000212_330 Hb_000212_330 Hb_009545_080--Hb_000212_330 Hb_032986_010 Hb_032986_010 Hb_009545_080--Hb_032986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4707 10.2983 18.4333 8.46019 17.049 16.6302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3474 15.2871 14.3144 16.4877 11.4163

CAGE analysis