Hb_000575_100

Information

Type -
Description -
Location Contig575: 118820-123558
Sequence    

Annotation

kegg
ID vvi:100248697
description nephrocystin-3
nr
ID XP_012080789.1
description PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
swissprot
ID Q7Z494
description Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1
trembl
ID E0CV63
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49631: 118863-120250 , PASA_asmbl_49632: 121956-123503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_100 0.0 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
2 Hb_055062_040 0.093021966 - - ceramidase, putative [Ricinus communis]
3 Hb_000849_080 0.09741863 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
4 Hb_004306_030 0.0983390092 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
5 Hb_002025_330 0.0999306686 - - peptide transporter, putative [Ricinus communis]
6 Hb_004048_120 0.1021265785 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
7 Hb_003280_020 0.1039268248 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
8 Hb_001341_180 0.1074867697 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
9 Hb_004800_200 0.1099526401 - - -
10 Hb_000011_270 0.1104199246 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
11 Hb_024570_040 0.1107415809 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
12 Hb_000001_170 0.1116483897 - - amino acid transporter, putative [Ricinus communis]
13 Hb_012330_010 0.1122847741 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
14 Hb_012733_070 0.1141323875 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
15 Hb_004143_160 0.1166824095 - - SAB, putative [Ricinus communis]
16 Hb_002232_490 0.1178219625 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
17 Hb_000960_040 0.1187789225 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
18 Hb_002968_080 0.1207797081 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
19 Hb_000800_110 0.1208747211 - - NAD dehydrogenase, putative [Ricinus communis]
20 Hb_001789_020 0.1224052317 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000575_100 Hb_000575_100 Hb_055062_040 Hb_055062_040 Hb_000575_100--Hb_055062_040 Hb_000849_080 Hb_000849_080 Hb_000575_100--Hb_000849_080 Hb_004306_030 Hb_004306_030 Hb_000575_100--Hb_004306_030 Hb_002025_330 Hb_002025_330 Hb_000575_100--Hb_002025_330 Hb_004048_120 Hb_004048_120 Hb_000575_100--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000575_100--Hb_003280_020 Hb_055062_040--Hb_002025_330 Hb_055062_040--Hb_003280_020 Hb_084670_010 Hb_084670_010 Hb_055062_040--Hb_084670_010 Hb_055062_040--Hb_004048_120 Hb_012733_070 Hb_012733_070 Hb_055062_040--Hb_012733_070 Hb_002749_060 Hb_002749_060 Hb_055062_040--Hb_002749_060 Hb_000140_450 Hb_000140_450 Hb_000849_080--Hb_000140_450 Hb_103688_010 Hb_103688_010 Hb_000849_080--Hb_103688_010 Hb_002007_260 Hb_002007_260 Hb_000849_080--Hb_002007_260 Hb_002808_020 Hb_002808_020 Hb_000849_080--Hb_002808_020 Hb_024570_040 Hb_024570_040 Hb_000849_080--Hb_024570_040 Hb_000608_300 Hb_000608_300 Hb_004306_030--Hb_000608_300 Hb_001789_040 Hb_001789_040 Hb_004306_030--Hb_001789_040 Hb_000568_050 Hb_000568_050 Hb_004306_030--Hb_000568_050 Hb_001244_150 Hb_001244_150 Hb_004306_030--Hb_001244_150 Hb_012055_110 Hb_012055_110 Hb_004306_030--Hb_012055_110 Hb_000011_270 Hb_000011_270 Hb_004306_030--Hb_000011_270 Hb_002025_330--Hb_003280_020 Hb_002025_330--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_002025_330--Hb_004143_160 Hb_000922_030 Hb_000922_030 Hb_002025_330--Hb_000922_030 Hb_000358_050 Hb_000358_050 Hb_002025_330--Hb_000358_050 Hb_004048_120--Hb_003280_020 Hb_004048_120--Hb_004143_160 Hb_004048_120--Hb_002749_060 Hb_000261_480 Hb_000261_480 Hb_004048_120--Hb_000261_480 Hb_004048_120--Hb_000358_050 Hb_003280_020--Hb_002749_060 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.883559 1.6158 2.06809 2.78847 2.30051 2.73959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24589 0.921455 0.741686 3.8488 4.04928

CAGE analysis