Hb_000575_110

Information

Type -
Description -
Location Contig575: 131521-134936
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_002524894.1
description S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
swissprot
ID O64771
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61480 OS=Arabidopsis thaliana GN=At1g61480 PE=2 SV=2
trembl
ID B9SW97
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0265270 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_110 0.0 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
2 Hb_000422_020 0.092375289 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_009486_100 0.092788363 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_056101_010 0.0932178734 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
5 Hb_025526_010 0.1340152197 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
6 Hb_002048_010 0.1395741763 - - unknown [Lotus japonicus]
7 Hb_003900_050 0.1424540962 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
8 Hb_011282_070 0.146599422 - - ATP binding protein, putative [Ricinus communis]
9 Hb_004712_080 0.1470116534 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
10 Hb_000380_130 0.1473750555 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
11 Hb_000683_010 0.1482972431 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
12 Hb_008080_050 0.1493993255 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_006970_100 0.1503985884 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_005116_010 0.1511776559 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
15 Hb_001675_230 0.1524392731 - - scab resistance family protein [Populus trichocarpa]
16 Hb_002928_220 0.1527481429 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
17 Hb_004463_040 0.1537118738 - - -
18 Hb_175968_010 0.1541332259 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
19 Hb_004881_060 0.1574826139 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
20 Hb_074892_010 0.1575053538 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000575_110 Hb_000575_110 Hb_000422_020 Hb_000422_020 Hb_000575_110--Hb_000422_020 Hb_009486_100 Hb_009486_100 Hb_000575_110--Hb_009486_100 Hb_056101_010 Hb_056101_010 Hb_000575_110--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000575_110--Hb_025526_010 Hb_002048_010 Hb_002048_010 Hb_000575_110--Hb_002048_010 Hb_003900_050 Hb_003900_050 Hb_000575_110--Hb_003900_050 Hb_000683_010 Hb_000683_010 Hb_000422_020--Hb_000683_010 Hb_008768_010 Hb_008768_010 Hb_000422_020--Hb_008768_010 Hb_000422_020--Hb_003900_050 Hb_000422_020--Hb_056101_010 Hb_000422_020--Hb_025526_010 Hb_005116_010 Hb_005116_010 Hb_009486_100--Hb_005116_010 Hb_002928_220 Hb_002928_220 Hb_009486_100--Hb_002928_220 Hb_009486_100--Hb_056101_010 Hb_009812_010 Hb_009812_010 Hb_009486_100--Hb_009812_010 Hb_001454_300 Hb_001454_300 Hb_009486_100--Hb_001454_300 Hb_056101_010--Hb_025526_010 Hb_004881_060 Hb_004881_060 Hb_056101_010--Hb_004881_060 Hb_056101_010--Hb_005116_010 Hb_006788_150 Hb_006788_150 Hb_025526_010--Hb_006788_150 Hb_000661_230 Hb_000661_230 Hb_025526_010--Hb_000661_230 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080 Hb_020332_040 Hb_020332_040 Hb_002048_010--Hb_020332_040 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_002965_020 Hb_002965_020 Hb_002048_010--Hb_002965_020 Hb_004463_040 Hb_004463_040 Hb_002048_010--Hb_004463_040 Hb_000976_020 Hb_000976_020 Hb_002048_010--Hb_000976_020 Hb_000189_260 Hb_000189_260 Hb_002048_010--Hb_000189_260 Hb_004200_040 Hb_004200_040 Hb_003900_050--Hb_004200_040 Hb_003900_050--Hb_004463_040 Hb_000205_210 Hb_000205_210 Hb_003900_050--Hb_000205_210 Hb_000140_260 Hb_000140_260 Hb_003900_050--Hb_000140_260 Hb_003900_050--Hb_004881_060 Hb_000684_020 Hb_000684_020 Hb_003900_050--Hb_000684_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.10233 0.0498275 0.0375596 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0163809 0 0 0.741854 0.137207

CAGE analysis