Hb_000575_120

Information

Type -
Description -
Location Contig575: 136143-139885
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02060g
description POPTRDRAFT_568364; hypothetical protein
nr
ID XP_002316691.2
description hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
swissprot
ID Q9LPZ3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3
trembl
ID B9HYS1
description Serine/threonine-protein kinase OS=Populus trichocarpa GN=POPTR_0011s02060g PE=3 SV=2
Gene Ontology
ID GO:0004713
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_120 0.0 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
2 Hb_000015_060 0.0771742122 - - PREDICTED: uncharacterized protein LOC104239844 isoform X2 [Nicotiana sylvestris]
3 Hb_003058_060 0.0923542703 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
4 Hb_000453_060 0.0981605096 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
5 Hb_000009_570 0.1040120035 - - PREDICTED: cytochrome P450 CYP82D47-like [Populus euphratica]
6 Hb_000012_260 0.108006569 - - Far upstream element-binding 2 [Gossypium arboreum]
7 Hb_002110_030 0.1080294601 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
8 Hb_002170_050 0.1103602714 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
9 Hb_001575_010 0.1107917248 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002005_090 0.1114608148 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000369_130 0.1144754798 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
12 Hb_000656_380 0.1153815911 - - PREDICTED: exportin-T [Jatropha curcas]
13 Hb_002477_090 0.1155151417 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
14 Hb_023226_080 0.1158773478 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
15 Hb_001529_040 0.1168049191 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_001019_180 0.1197417011 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
17 Hb_001123_050 0.121221989 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003060_060 0.1222789561 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
19 Hb_073562_010 0.1223906233 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
20 Hb_003581_250 0.1226907068 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]

Gene co-expression network

sample Hb_000575_120 Hb_000575_120 Hb_000015_060 Hb_000015_060 Hb_000575_120--Hb_000015_060 Hb_003058_060 Hb_003058_060 Hb_000575_120--Hb_003058_060 Hb_000453_060 Hb_000453_060 Hb_000575_120--Hb_000453_060 Hb_000009_570 Hb_000009_570 Hb_000575_120--Hb_000009_570 Hb_000012_260 Hb_000012_260 Hb_000575_120--Hb_000012_260 Hb_002110_030 Hb_002110_030 Hb_000575_120--Hb_002110_030 Hb_000656_380 Hb_000656_380 Hb_000015_060--Hb_000656_380 Hb_003097_170 Hb_003097_170 Hb_000015_060--Hb_003097_170 Hb_003177_060 Hb_003177_060 Hb_000015_060--Hb_003177_060 Hb_000856_310 Hb_000856_310 Hb_000015_060--Hb_000856_310 Hb_000015_060--Hb_003058_060 Hb_000369_130 Hb_000369_130 Hb_003058_060--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_003058_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_000579_230 Hb_000579_230 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020 Hb_000291_090 Hb_000291_090 Hb_000453_060--Hb_000291_090 Hb_000170_150 Hb_000170_150 Hb_000453_060--Hb_000170_150 Hb_000166_130 Hb_000166_130 Hb_000453_060--Hb_000166_130 Hb_013399_070 Hb_013399_070 Hb_000453_060--Hb_013399_070 Hb_000453_060--Hb_003058_060 Hb_000453_060--Hb_000656_380 Hb_000011_230 Hb_000011_230 Hb_000009_570--Hb_000011_230 Hb_004954_070 Hb_004954_070 Hb_000009_570--Hb_004954_070 Hb_000009_570--Hb_000453_060 Hb_000296_070 Hb_000296_070 Hb_000009_570--Hb_000296_070 Hb_004602_040 Hb_004602_040 Hb_000009_570--Hb_004602_040 Hb_003835_070 Hb_003835_070 Hb_000012_260--Hb_003835_070 Hb_000012_260--Hb_000656_380 Hb_023226_080 Hb_023226_080 Hb_000012_260--Hb_023226_080 Hb_000614_210 Hb_000614_210 Hb_000012_260--Hb_000614_210 Hb_000012_260--Hb_003058_060 Hb_000107_660 Hb_000107_660 Hb_000012_260--Hb_000107_660 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_001019_180 Hb_001019_180 Hb_002110_030--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_000330_040 Hb_000330_040 Hb_002110_030--Hb_000330_040 Hb_011512_090 Hb_011512_090 Hb_002110_030--Hb_011512_090 Hb_001575_010 Hb_001575_010 Hb_002110_030--Hb_001575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.814507 2.68289 0.885832 0.792741 1.83281 2.55814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.764917 1.24308 1.32358 2.86193 0.946835

CAGE analysis