Hb_000576_030

Information

Type -
Description -
Location Contig576: 97238-98869
Sequence    

Annotation

kegg
ID rcu:RCOM_0803440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012077571.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
swissprot
ID Q9SIL5
description Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
trembl
ID A0A067KR12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07800 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g20540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 013_O22.ab1: 97839-98564 , 034_F16.ab1: 97841-98564 , 045_H06.ab1: 97841-98564 , 051_O10.ab1: 97841-98564

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
2 Hb_185467_020 0.0958284733 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_008453_150 0.0968124577 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
4 Hb_003297_030 0.0989847034 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
5 Hb_000084_310 0.1004273716 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
6 Hb_004195_160 0.102286793 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
7 Hb_002890_340 0.1024729816 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
8 Hb_001157_060 0.102612024 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
9 Hb_002631_050 0.1039274519 - - membrane associated ring finger 1,8, putative [Ricinus communis]
10 Hb_007426_230 0.1051432916 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
11 Hb_000421_260 0.1052197098 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
12 Hb_000417_180 0.1071220456 - - 60S ribosomal protein L11, putative [Ricinus communis]
13 Hb_002609_110 0.1082867645 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
14 Hb_118419_020 0.1083373728 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
15 Hb_002007_270 0.1091779918 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
16 Hb_001221_230 0.1094924132 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000057_040 0.109758955 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001538_010 0.1101748569 - - -
19 Hb_010863_080 0.1103368147 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
20 Hb_007575_040 0.1108150426 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000576_030 Hb_000576_030 Hb_185467_020 Hb_185467_020 Hb_000576_030--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_000576_030--Hb_008453_150 Hb_003297_030 Hb_003297_030 Hb_000576_030--Hb_003297_030 Hb_000084_310 Hb_000084_310 Hb_000576_030--Hb_000084_310 Hb_004195_160 Hb_004195_160 Hb_000576_030--Hb_004195_160 Hb_002890_340 Hb_002890_340 Hb_000576_030--Hb_002890_340 Hb_185467_020--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_185467_020--Hb_002631_050 Hb_002874_070 Hb_002874_070 Hb_185467_020--Hb_002874_070 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_185467_020--Hb_001981_070 Hb_008453_150--Hb_002631_050 Hb_008453_150--Hb_000084_310 Hb_008453_150--Hb_001981_070 Hb_014568_030 Hb_014568_030 Hb_008453_150--Hb_014568_030 Hb_057183_040 Hb_057183_040 Hb_008453_150--Hb_057183_040 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000179_210 Hb_000179_210 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_000084_310--Hb_002631_050 Hb_000084_310--Hb_001981_070 Hb_000365_360 Hb_000365_360 Hb_000084_310--Hb_000365_360 Hb_168918_020 Hb_168918_020 Hb_000084_310--Hb_168918_020 Hb_000084_310--Hb_185467_020 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49887 0.282666 0.134722 0.334932 1.52974 1.60385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.708906 1.56167 1.38745 0.453662 0.374636

CAGE analysis