Hb_000576_040

Information

Type -
Description -
Location Contig576: 98984-100608
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26090g
description POPTRDRAFT_763405; pentatricopeptide repeat-containing family protein
nr
ID XP_012077465.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
swissprot
ID P0C898
description Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
trembl
ID A0A067KGY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07799 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g15130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49666: 97839-98565
cDNA
(Sanger)
(ID:Location)		 051_O10r.ab1: 97841-98558

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_040 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
2 Hb_004306_060 0.1176209521 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
3 Hb_152439_020 0.1240531578 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
4 Hb_000479_130 0.1285340794 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
5 Hb_119600_040 0.1375139061 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
6 Hb_000193_250 0.1378665658 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
7 Hb_000297_200 0.1401871383 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
8 Hb_000934_270 0.1411302123 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
9 Hb_006501_040 0.1429904578 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
10 Hb_002739_110 0.1443834294 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
11 Hb_000059_220 0.1489757673 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
12 Hb_009491_040 0.1498916737 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
13 Hb_003747_030 0.1505039577 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
14 Hb_000935_050 0.1518245487 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
15 Hb_007075_050 0.1534573584 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_008085_040 0.1535824744 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
17 Hb_000236_140 0.1548792106 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
18 Hb_004128_180 0.15510796 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000056_100 0.1551896157 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
20 Hb_003861_080 0.1554264725 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000576_040 Hb_000576_040 Hb_004306_060 Hb_004306_060 Hb_000576_040--Hb_004306_060 Hb_152439_020 Hb_152439_020 Hb_000576_040--Hb_152439_020 Hb_000479_130 Hb_000479_130 Hb_000576_040--Hb_000479_130 Hb_119600_040 Hb_119600_040 Hb_000576_040--Hb_119600_040 Hb_000193_250 Hb_000193_250 Hb_000576_040--Hb_000193_250 Hb_000297_200 Hb_000297_200 Hb_000576_040--Hb_000297_200 Hb_004306_060--Hb_000479_130 Hb_000934_270 Hb_000934_270 Hb_004306_060--Hb_000934_270 Hb_000236_140 Hb_000236_140 Hb_004306_060--Hb_000236_140 Hb_002498_060 Hb_002498_060 Hb_004306_060--Hb_002498_060 Hb_000059_220 Hb_000059_220 Hb_004306_060--Hb_000059_220 Hb_004306_060--Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_152439_020--Hb_002498_060 Hb_000479_130--Hb_000236_140 Hb_007416_270 Hb_007416_270 Hb_000479_130--Hb_007416_270 Hb_000479_130--Hb_000934_270 Hb_000172_560 Hb_000172_560 Hb_000479_130--Hb_000172_560 Hb_007075_050 Hb_007075_050 Hb_000479_130--Hb_007075_050 Hb_000935_050 Hb_000935_050 Hb_119600_040--Hb_000935_050 Hb_119600_040--Hb_007075_050 Hb_005686_030 Hb_005686_030 Hb_119600_040--Hb_005686_030 Hb_027472_170 Hb_027472_170 Hb_119600_040--Hb_027472_170 Hb_119600_040--Hb_000236_140 Hb_119600_040--Hb_000297_200 Hb_001856_020 Hb_001856_020 Hb_000193_250--Hb_001856_020 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210 Hb_000997_400 Hb_000997_400 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150 Hb_000297_200--Hb_000059_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.529206 0.159075 0.0390004 0.053938 0.212813 0.336154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156207 0.337915 0.915813 0.09839 0.063687

CAGE analysis