Hb_000576_060

Information

Type -
Description -
Location Contig576: 116209-117376
Sequence    

Annotation

kegg
ID cit:102620448
description hypothetical protein
nr
ID ABM89110.1
description truncated hemoglobin [Populus tremula x Populus tremuloides]
swissprot
ID Q67XG0
description Two-on-two hemoglobin-3 OS=Arabidopsis thaliana GN=GLB3 PE=1 SV=1
trembl
ID A2TDC3
description Truncated hemoglobin OS=Populus tremula x Populus tremuloides GN=TrHb PE=2 SV=1
Gene Ontology
ID GO:0005506
description two-on-two hemoglobin-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49672: 116103-117698
cDNA
(Sanger)
(ID:Location)		 021_E07.ab1: 116183-117698 , 023_A01.ab1: 116183-117661 , 053_O01.ab1: 116175-117697

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_060 0.0 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
2 Hb_008921_020 0.0597356689 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
3 Hb_000735_040 0.071371892 - - 60S ribosomal protein L32A [Hevea brasiliensis]
4 Hb_001789_050 0.0746838045 - - 60S ribosomal protein L36-2 [Morus notabilis]
5 Hb_000062_650 0.0861734362 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
6 Hb_000788_010 0.086305666 - - 40S ribosomal protein S16A [Hevea brasiliensis]
7 Hb_001141_140 0.0895681155 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
8 Hb_007245_080 0.0903314517 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
9 Hb_006478_160 0.0909636687 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
10 Hb_000506_070 0.0928013926 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
11 Hb_007120_090 0.0933210447 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
12 Hb_005063_050 0.094993712 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
13 Hb_003018_020 0.0967457839 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
14 Hb_009476_020 0.0976338834 - - tryptophan biosynthesis protein, putative [Ricinus communis]
15 Hb_000093_110 0.0986166413 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
16 Hb_007044_130 0.0996314514 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
17 Hb_174865_010 0.1000606096 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
18 Hb_004223_040 0.10074865 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
19 Hb_000915_120 0.1014930261 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
20 Hb_143496_010 0.1019303972 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]

Gene co-expression network

sample Hb_000576_060 Hb_000576_060 Hb_008921_020 Hb_008921_020 Hb_000576_060--Hb_008921_020 Hb_000735_040 Hb_000735_040 Hb_000576_060--Hb_000735_040 Hb_001789_050 Hb_001789_050 Hb_000576_060--Hb_001789_050 Hb_000062_650 Hb_000062_650 Hb_000576_060--Hb_000062_650 Hb_000788_010 Hb_000788_010 Hb_000576_060--Hb_000788_010 Hb_001141_140 Hb_001141_140 Hb_000576_060--Hb_001141_140 Hb_005063_050 Hb_005063_050 Hb_008921_020--Hb_005063_050 Hb_008921_020--Hb_000735_040 Hb_008921_020--Hb_000062_650 Hb_000506_070 Hb_000506_070 Hb_008921_020--Hb_000506_070 Hb_008921_020--Hb_001141_140 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000735_040--Hb_000506_070 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_003018_020 Hb_003018_020 Hb_000735_040--Hb_003018_020 Hb_007120_090 Hb_007120_090 Hb_001789_050--Hb_007120_090 Hb_000997_120 Hb_000997_120 Hb_001789_050--Hb_000997_120 Hb_007245_080 Hb_007245_080 Hb_001789_050--Hb_007245_080 Hb_000212_210 Hb_000212_210 Hb_001789_050--Hb_000212_210 Hb_000676_160 Hb_000676_160 Hb_001789_050--Hb_000676_160 Hb_000062_650--Hb_000506_070 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_001369_170 Hb_001369_170 Hb_000788_010--Hb_001369_170 Hb_006478_160 Hb_006478_160 Hb_000788_010--Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_000788_010--Hb_000567_410 Hb_001085_270 Hb_001085_270 Hb_000788_010--Hb_001085_270 Hb_002811_080 Hb_002811_080 Hb_000788_010--Hb_002811_080 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001141_140--Hb_003226_100 Hb_001141_140--Hb_007044_130 Hb_001141_140--Hb_003018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.6977 13.3081 30.1354 38.236 27.5697 20.4834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.3823 144.059 38.1368 33.489 12.8331

CAGE analysis