Hb_000577_010

Information

Type -
Description -
Location Contig577: 16632-26844
Sequence    

Annotation

kegg
ID rcu:RCOM_0737300
description cellular nucleic acid binding protein, putative
nr
ID KDP42945.1
description hypothetical protein JCGZ_23887 [Jatropha curcas]
swissprot
ID Q04832
description DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1
trembl
ID A0A067LEK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23887 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc knuckle family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49690: 25746-26556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000577_010 0.0 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
2 Hb_007163_090 0.0560169417 - - PREDICTED: protein spt2-like [Jatropha curcas]
3 Hb_004724_060 0.057368782 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
4 Hb_001663_030 0.0691174834 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
5 Hb_003464_060 0.0719259322 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
6 Hb_001226_030 0.0729664437 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
7 Hb_001797_050 0.0767632973 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
8 Hb_007757_110 0.0770426106 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_002311_040 0.0772470156 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
10 Hb_001507_020 0.0784981348 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
11 Hb_000386_030 0.0792846556 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
12 Hb_120327_010 0.0797304513 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
13 Hb_008500_010 0.0802544058 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
14 Hb_019654_190 0.0814235537 - - protein kinase, putative [Ricinus communis]
15 Hb_004837_040 0.0825418415 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
16 Hb_001736_040 0.0833073965 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
17 Hb_000152_820 0.0833146822 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
18 Hb_123352_020 0.0844740213 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
19 Hb_011673_030 0.08485044 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
20 Hb_001007_060 0.0852776977 - - Transcriptional corepressor SEUSS [Glycine soja]

Gene co-expression network

sample Hb_000577_010 Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_000577_010--Hb_007163_090 Hb_004724_060 Hb_004724_060 Hb_000577_010--Hb_004724_060 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_003464_060 Hb_003464_060 Hb_000577_010--Hb_003464_060 Hb_001226_030 Hb_001226_030 Hb_000577_010--Hb_001226_030 Hb_001797_050 Hb_001797_050 Hb_000577_010--Hb_001797_050 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_007163_090--Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_004724_060--Hb_123352_020 Hb_003994_240 Hb_003994_240 Hb_001663_030--Hb_003994_240 Hb_001663_030--Hb_007163_090 Hb_000802_080 Hb_000802_080 Hb_001663_030--Hb_000802_080 Hb_001789_090 Hb_001789_090 Hb_001663_030--Hb_001789_090 Hb_000260_220 Hb_000260_220 Hb_001663_030--Hb_000260_220 Hb_000768_040 Hb_000768_040 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_004684_010 Hb_004684_010 Hb_003464_060--Hb_004684_010 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_001226_030--Hb_123352_020 Hb_001226_030--Hb_000768_040 Hb_000487_290 Hb_000487_290 Hb_001226_030--Hb_000487_290 Hb_001226_030--Hb_004724_060 Hb_001797_050--Hb_000207_390 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8053 13.2702 4.03561 6.27725 15.8098 23.6777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3189 12.2937 19.7948 12.4217 9.82503

CAGE analysis