Hb_000577_050

Information

Type -
Description -
Location Contig577: 145205-145754
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49699: 145238-147710 , PASA_asmbl_49701: 145422-145815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000577_050 0.0 - - -
2 Hb_000656_320 0.1452086028 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
3 Hb_006060_010 0.1461581925 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
4 Hb_001775_090 0.1534083274 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
5 Hb_003599_060 0.1605801882 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_002217_370 0.1738480954 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105643685 [Jatropha curcas]
7 Hb_001541_190 0.1744203873 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
8 Hb_001007_090 0.1786045773 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
9 Hb_003119_040 0.1812321338 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
10 Hb_002048_100 0.1813851138 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
11 Hb_001633_160 0.1825342517 - - PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
12 Hb_000260_610 0.1842431867 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
13 Hb_176472_020 0.1853645301 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000371_030 0.1856214638 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
15 Hb_000059_030 0.1859446678 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
16 Hb_004712_090 0.1879132422 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
17 Hb_000193_060 0.1901974863 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
18 Hb_031266_030 0.1902107545 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
19 Hb_003667_020 0.1904583445 - - conserved hypothetical protein 16 [Hevea brasiliensis]
20 Hb_000856_230 0.1914930789 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000577_050 Hb_000577_050 Hb_000656_320 Hb_000656_320 Hb_000577_050--Hb_000656_320 Hb_006060_010 Hb_006060_010 Hb_000577_050--Hb_006060_010 Hb_001775_090 Hb_001775_090 Hb_000577_050--Hb_001775_090 Hb_003599_060 Hb_003599_060 Hb_000577_050--Hb_003599_060 Hb_002217_370 Hb_002217_370 Hb_000577_050--Hb_002217_370 Hb_001541_190 Hb_001541_190 Hb_000577_050--Hb_001541_190 Hb_001329_010 Hb_001329_010 Hb_000656_320--Hb_001329_010 Hb_000656_320--Hb_006060_010 Hb_000936_030 Hb_000936_030 Hb_000656_320--Hb_000936_030 Hb_013344_010 Hb_013344_010 Hb_000656_320--Hb_013344_010 Hb_014497_070 Hb_014497_070 Hb_000656_320--Hb_014497_070 Hb_012753_150 Hb_012753_150 Hb_006060_010--Hb_012753_150 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_006060_010--Hb_013344_010 Hb_173271_010 Hb_173271_010 Hb_001775_090--Hb_173271_010 Hb_000162_130 Hb_000162_130 Hb_001775_090--Hb_000162_130 Hb_183192_010 Hb_183192_010 Hb_001775_090--Hb_183192_010 Hb_001459_040 Hb_001459_040 Hb_001775_090--Hb_001459_040 Hb_001775_090--Hb_001541_190 Hb_000142_030 Hb_000142_030 Hb_003599_060--Hb_000142_030 Hb_031266_030 Hb_031266_030 Hb_003599_060--Hb_031266_030 Hb_003599_060--Hb_012753_150 Hb_003599_060--Hb_014497_070 Hb_003599_060--Hb_006060_010 Hb_003599_060--Hb_003878_060 Hb_004586_050 Hb_004586_050 Hb_002217_370--Hb_004586_050 Hb_000331_020 Hb_000331_020 Hb_002217_370--Hb_000331_020 Hb_006197_010 Hb_006197_010 Hb_002217_370--Hb_006197_010 Hb_022465_010 Hb_022465_010 Hb_002217_370--Hb_022465_010 Hb_001398_110 Hb_001398_110 Hb_002217_370--Hb_001398_110 Hb_002217_370--Hb_000656_320 Hb_000069_300 Hb_000069_300 Hb_001541_190--Hb_000069_300 Hb_001307_020 Hb_001307_020 Hb_001541_190--Hb_001307_020 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_000175_300 Hb_000175_300 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.527038 5.2784 20.675 8.49646 0.158235 0.558216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.524784 0.927647 0 0.256764 0.57984

CAGE analysis