Hb_000577_060

Information

Type -
Description -
Location Contig577: 145236-145578
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000577_060 0.0 - - -
2 Hb_000753_270 0.1035804706 - - -
3 Hb_000069_290 0.1488601716 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
4 Hb_004308_010 0.1556692778 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
5 Hb_000614_310 0.1813262151 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000188_080 0.1944523676 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
7 Hb_054581_010 0.1955357016 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
8 Hb_007210_010 0.222365279 - - -
9 Hb_003333_070 0.2245152129 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]
10 Hb_008535_020 0.230382158 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
11 Hb_000002_190 0.2343375433 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
12 Hb_000003_520 0.2343375433 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
13 Hb_000005_170 0.2343375433 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
14 Hb_000009_230 0.2343375433 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
15 Hb_000011_110 0.2343375433 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
16 Hb_000012_390 0.2343375433 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000018_070 0.2343375433 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
18 Hb_000020_130 0.2343375433 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
19 Hb_000024_090 0.2343375433 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000025_560 0.2343375433 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_000577_060 Hb_000577_060 Hb_000753_270 Hb_000753_270 Hb_000577_060--Hb_000753_270 Hb_000069_290 Hb_000069_290 Hb_000577_060--Hb_000069_290 Hb_004308_010 Hb_004308_010 Hb_000577_060--Hb_004308_010 Hb_000614_310 Hb_000614_310 Hb_000577_060--Hb_000614_310 Hb_000188_080 Hb_000188_080 Hb_000577_060--Hb_000188_080 Hb_054581_010 Hb_054581_010 Hb_000577_060--Hb_054581_010 Hb_000753_270--Hb_000069_290 Hb_000753_270--Hb_054581_010 Hb_000753_270--Hb_004308_010 Hb_000753_270--Hb_000614_310 Hb_027450_020 Hb_027450_020 Hb_000753_270--Hb_027450_020 Hb_000069_290--Hb_054581_010 Hb_000069_290--Hb_000614_310 Hb_000069_290--Hb_004308_010 Hb_000069_290--Hb_027450_020 Hb_003333_070 Hb_003333_070 Hb_004308_010--Hb_003333_070 Hb_002309_030 Hb_002309_030 Hb_004308_010--Hb_002309_030 Hb_004308_010--Hb_000188_080 Hb_010866_020 Hb_010866_020 Hb_004308_010--Hb_010866_020 Hb_000170_180 Hb_000170_180 Hb_000614_310--Hb_000170_180 Hb_000614_310--Hb_054581_010 Hb_001277_060 Hb_001277_060 Hb_000614_310--Hb_001277_060 Hb_000188_080--Hb_003333_070 Hb_008535_020 Hb_008535_020 Hb_000188_080--Hb_008535_020 Hb_000325_090 Hb_000325_090 Hb_000188_080--Hb_000325_090 Hb_001247_050 Hb_001247_050 Hb_000188_080--Hb_001247_050 Hb_000566_060 Hb_000566_060 Hb_000188_080--Hb_000566_060 Hb_054581_010--Hb_027450_020 Hb_009486_110 Hb_009486_110 Hb_054581_010--Hb_009486_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.25266 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383959 0 0 0 0

CAGE analysis