Hb_000577_070

Information

Type -
Description -
Location Contig577: 147431-148233
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000577_070 0.0 - - -
2 Hb_000244_140 0.145406172 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
3 Hb_000172_470 0.1469942381 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
4 Hb_000092_050 0.1760693743 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
5 Hb_074836_020 0.1767849394 - - unnamed protein product [Vitis vinifera]
6 Hb_000140_300 0.2008618347 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000500_070 0.2045265301 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
8 Hb_002809_040 0.212466147 - - conserved hypothetical protein [Ricinus communis]
9 Hb_158296_010 0.2244919065 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
10 Hb_136944_010 0.2250646166 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
11 Hb_002681_150 0.226070207 - - uridine cytidine kinase I, putative [Ricinus communis]
12 Hb_005479_050 0.2293821881 - - -
13 Hb_080081_010 0.2337937358 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
14 Hb_001428_010 0.2363987801 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
15 Hb_102772_010 0.2366121086 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000680_100 0.2371794953 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000562_010 0.2413738254 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
18 Hb_000175_600 0.2440881515 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
19 Hb_000497_080 0.2450096008 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003544_080 0.2486457182 - - Protein HVA22, putative [Ricinus communis]

Gene co-expression network

sample Hb_000577_070 Hb_000577_070 Hb_000244_140 Hb_000244_140 Hb_000577_070--Hb_000244_140 Hb_000172_470 Hb_000172_470 Hb_000577_070--Hb_000172_470 Hb_000092_050 Hb_000092_050 Hb_000577_070--Hb_000092_050 Hb_074836_020 Hb_074836_020 Hb_000577_070--Hb_074836_020 Hb_000140_300 Hb_000140_300 Hb_000577_070--Hb_000140_300 Hb_000500_070 Hb_000500_070 Hb_000577_070--Hb_000500_070 Hb_000244_140--Hb_000092_050 Hb_080081_010 Hb_080081_010 Hb_000244_140--Hb_080081_010 Hb_000244_140--Hb_000172_470 Hb_000244_140--Hb_074836_020 Hb_005479_050 Hb_005479_050 Hb_000244_140--Hb_005479_050 Hb_000172_470--Hb_000500_070 Hb_000172_470--Hb_000092_050 Hb_000172_470--Hb_074836_020 Hb_006816_110 Hb_006816_110 Hb_000172_470--Hb_006816_110 Hb_000092_050--Hb_080081_010 Hb_000010_040 Hb_000010_040 Hb_000092_050--Hb_000010_040 Hb_000025_220 Hb_000025_220 Hb_000092_050--Hb_000025_220 Hb_000635_020 Hb_000635_020 Hb_074836_020--Hb_000635_020 Hb_007575_090 Hb_007575_090 Hb_074836_020--Hb_007575_090 Hb_000236_210 Hb_000236_210 Hb_074836_020--Hb_000236_210 Hb_009079_010 Hb_009079_010 Hb_000140_300--Hb_009079_010 Hb_055276_010 Hb_055276_010 Hb_000140_300--Hb_055276_010 Hb_000729_040 Hb_000729_040 Hb_000140_300--Hb_000729_040 Hb_003754_010 Hb_003754_010 Hb_000140_300--Hb_003754_010 Hb_002681_150 Hb_002681_150 Hb_000140_300--Hb_002681_150 Hb_000997_220 Hb_000997_220 Hb_000140_300--Hb_000997_220 Hb_000500_070--Hb_006816_110 Hb_005357_170 Hb_005357_170 Hb_000500_070--Hb_005357_170 Hb_001741_110 Hb_001741_110 Hb_000500_070--Hb_001741_110 Hb_000139_110 Hb_000139_110 Hb_000500_070--Hb_000139_110 Hb_001486_050 Hb_001486_050 Hb_000500_070--Hb_001486_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.0521 60.883 443.118 0 68.5677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51261 2.06801 2.15702 0 39.8173

CAGE analysis