Hb_000577_090

Information

Type -
Description -
Location Contig577: 153575-154135
Sequence    

Annotation

kegg
ID mdm:103421475
description 50S ribosomal protein L12, chloroplastic-like
nr
ID XP_012066324.1
description PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
swissprot
ID P36210
description 50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=1
trembl
ID A0A067L3E5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23894 PE=3 SV=1
Gene Ontology
ID GO:0000311
description 50s ribosomal protein l12- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000577_090 0.0 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
2 Hb_000699_090 0.0951982533 - - cyclophilin, putative [Ricinus communis]
3 Hb_000093_110 0.106258615 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
4 Hb_002006_130 0.1118315247 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
5 Hb_000840_180 0.1131490377 - - protein BOLA2 [Jatropha curcas]
6 Hb_003929_150 0.1156558048 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
7 Hb_000676_160 0.1204768307 - - folate carrier protein, putative [Ricinus communis]
8 Hb_002235_080 0.1216736181 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
9 Hb_010815_030 0.1245884537 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
10 Hb_004057_010 0.1259533416 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
11 Hb_000111_100 0.1265819866 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
12 Hb_000317_070 0.1283315935 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
13 Hb_009476_020 0.1283722523 - - tryptophan biosynthesis protein, putative [Ricinus communis]
14 Hb_006478_160 0.1284310632 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
15 Hb_003038_190 0.1290172207 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
16 Hb_000948_220 0.1292474505 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
17 Hb_004846_090 0.1298753962 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
18 Hb_007220_010 0.130332306 - - PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Jatropha curcas]
19 Hb_000906_040 0.1308047385 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
20 Hb_007760_040 0.1309066184 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]

Gene co-expression network

sample Hb_000577_090 Hb_000577_090 Hb_000699_090 Hb_000699_090 Hb_000577_090--Hb_000699_090 Hb_000093_110 Hb_000093_110 Hb_000577_090--Hb_000093_110 Hb_002006_130 Hb_002006_130 Hb_000577_090--Hb_002006_130 Hb_000840_180 Hb_000840_180 Hb_000577_090--Hb_000840_180 Hb_003929_150 Hb_003929_150 Hb_000577_090--Hb_003929_150 Hb_000676_160 Hb_000676_160 Hb_000577_090--Hb_000676_160 Hb_011236_010 Hb_011236_010 Hb_000699_090--Hb_011236_010 Hb_000906_040 Hb_000906_040 Hb_000699_090--Hb_000906_040 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_004223_040 Hb_004223_040 Hb_000699_090--Hb_004223_040 Hb_000574_160 Hb_000574_160 Hb_000699_090--Hb_000574_160 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000093_110--Hb_002588_010 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000567_410 Hb_000567_410 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_000915_120 Hb_000915_120 Hb_002006_130--Hb_000915_120 Hb_002006_130--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_002006_130--Hb_007304_070 Hb_000331_700 Hb_000331_700 Hb_002006_130--Hb_000331_700 Hb_002006_130--Hb_000093_110 Hb_000203_020 Hb_000203_020 Hb_002006_130--Hb_000203_020 Hb_000169_040 Hb_000169_040 Hb_000840_180--Hb_000169_040 Hb_004127_020 Hb_004127_020 Hb_000840_180--Hb_004127_020 Hb_002798_020 Hb_002798_020 Hb_000840_180--Hb_002798_020 Hb_004459_040 Hb_004459_040 Hb_000840_180--Hb_004459_040 Hb_026053_020 Hb_026053_020 Hb_000840_180--Hb_026053_020 Hb_000996_140 Hb_000996_140 Hb_000840_180--Hb_000996_140 Hb_002235_080 Hb_002235_080 Hb_003929_150--Hb_002235_080 Hb_003929_150--Hb_011236_010 Hb_003929_150--Hb_006478_160 Hb_000155_160 Hb_000155_160 Hb_003929_150--Hb_000155_160 Hb_007245_080 Hb_007245_080 Hb_003929_150--Hb_007245_080 Hb_001718_030 Hb_001718_030 Hb_003929_150--Hb_001718_030 Hb_000676_160--Hb_174865_010 Hb_000676_160--Hb_000735_040 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090 Hb_007120_090 Hb_007120_090 Hb_000676_160--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.58416 12.7584 12.3758 15.0227 6.5652 9.55288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.5225 64.7369 14.8975 7.4166 18.3178

CAGE analysis