Hb_000579_010

Information

Type transcription factor
Description TF Family: SET
Location Contig579: 7578-22630
Sequence    

Annotation

kegg
ID rcu:RCOM_1546600
description huntingtin interacting protein, putative (EC:2.1.1.43)
nr
ID XP_012084659.1
description PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
swissprot
ID O23372
description Histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=2 SV=2
trembl
ID A0A067K671
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20287 PE=4 SV=1
Gene Ontology
ID GO:0042800
description probable histone-lysine n-methyltransferase atxr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49755: 7626-7791 , PASA_asmbl_49758: 14669-15670 , PASA_asmbl_49759: 20626-21235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_010 0.0 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
2 Hb_013405_160 0.0572223689 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
3 Hb_000703_130 0.0624887192 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
4 Hb_003939_060 0.0691825146 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000958_050 0.0693589403 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
6 Hb_000083_070 0.0698192813 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
7 Hb_000099_040 0.0727834925 - - unnamed protein product [Coffea canephora]
8 Hb_000934_210 0.0728362732 - - suppressor of ty, putative [Ricinus communis]
9 Hb_000645_130 0.0736330745 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
10 Hb_000377_050 0.0740766787 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
11 Hb_007818_030 0.0741212622 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
12 Hb_029977_040 0.0744158217 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
13 Hb_001534_210 0.074666156 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
14 Hb_001648_020 0.0748781245 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
15 Hb_000205_260 0.0752475883 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
16 Hb_009302_030 0.075525838 - - hypothetical protein RCOM_1176340 [Ricinus communis]
17 Hb_005832_010 0.0755427317 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
18 Hb_002350_010 0.0756976217 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
19 Hb_002687_090 0.0761625759 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
20 Hb_001904_030 0.0763751212 - - PREDICTED: importin-5 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_010 Hb_000579_010 Hb_013405_160 Hb_013405_160 Hb_000579_010--Hb_013405_160 Hb_000703_130 Hb_000703_130 Hb_000579_010--Hb_000703_130 Hb_003939_060 Hb_003939_060 Hb_000579_010--Hb_003939_060 Hb_000958_050 Hb_000958_050 Hb_000579_010--Hb_000958_050 Hb_000083_070 Hb_000083_070 Hb_000579_010--Hb_000083_070 Hb_000099_040 Hb_000099_040 Hb_000579_010--Hb_000099_040 Hb_002687_090 Hb_002687_090 Hb_013405_160--Hb_002687_090 Hb_013405_160--Hb_000703_130 Hb_013405_160--Hb_000083_070 Hb_000377_050 Hb_000377_050 Hb_013405_160--Hb_000377_050 Hb_000645_130 Hb_000645_130 Hb_013405_160--Hb_000645_130 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000703_130--Hb_002687_090 Hb_003929_210 Hb_003929_210 Hb_003939_060--Hb_003929_210 Hb_009302_030 Hb_009302_030 Hb_003939_060--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_003939_060--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000958_050--Hb_000645_130 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_000083_070--Hb_000925_090 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_012244_020 Hb_012244_020 Hb_000083_070--Hb_012244_020 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.21964 11.8682 6.71774 4.65586 6.81992 6.063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03699 3.63495 3.47603 5.66169 9.48321

CAGE analysis