Hb_000579_120

Information

Type -
Description -
Location Contig579: 142984-146317
Sequence    

Annotation

kegg
ID rcu:RCOM_1595690
description NAD dependent epimerase/dehydratase, putative
nr
ID XP_012071928.1
description PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
swissprot
ID P0AD12
description Protein YeeZ OS=Escherichia coli (strain K12) GN=yeeZ PE=1 SV=1
trembl
ID B9R7Z5
description NAD dependent epimerase/dehydratase, putative OS=Ricinus communis GN=RCOM_1595690 PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein yeez

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49776: 143087-146350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_120 0.0 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
2 Hb_000058_130 0.0506294554 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
3 Hb_001232_190 0.0548641871 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
4 Hb_000110_310 0.0593344266 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_009898_050 0.0648690237 - - PREDICTED: beta-taxilin [Jatropha curcas]
6 Hb_000976_120 0.0685343989 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
7 Hb_000207_150 0.0705014486 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
8 Hb_133702_010 0.0724494008 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_000270_680 0.0736583814 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
10 Hb_006153_070 0.0740906132 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
11 Hb_007831_010 0.0758232236 - - PREDICTED: oligoribonuclease [Vitis vinifera]
12 Hb_008616_050 0.0759370646 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
13 Hb_001472_100 0.0770705082 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
14 Hb_107879_010 0.077236119 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_002553_060 0.0792315503 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
16 Hb_000061_180 0.0814268976 - - exonuclease, putative [Ricinus communis]
17 Hb_002073_190 0.0821715277 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
18 Hb_027380_060 0.0824546408 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
19 Hb_014834_150 0.0824667484 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_001946_400 0.085590444 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000579_120 Hb_000579_120 Hb_000058_130 Hb_000058_130 Hb_000579_120--Hb_000058_130 Hb_001232_190 Hb_001232_190 Hb_000579_120--Hb_001232_190 Hb_000110_310 Hb_000110_310 Hb_000579_120--Hb_000110_310 Hb_009898_050 Hb_009898_050 Hb_000579_120--Hb_009898_050 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000207_150 Hb_000207_150 Hb_000579_120--Hb_000207_150 Hb_000058_130--Hb_000207_150 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_000058_130--Hb_000028_520 Hb_000058_130--Hb_001232_190 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_008616_050 Hb_008616_050 Hb_001232_190--Hb_008616_050 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_002641_060 Hb_002641_060 Hb_001232_190--Hb_002641_060 Hb_001232_190--Hb_000207_150 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_000110_310--Hb_009898_050 Hb_000270_680 Hb_000270_680 Hb_000110_310--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_000110_310--Hb_001472_100 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_009898_050--Hb_006153_070 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_000640_170 Hb_000640_170 Hb_009898_050--Hb_000640_170 Hb_000976_120--Hb_001472_100 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_003647_140 Hb_003647_140 Hb_000976_120--Hb_003647_140 Hb_000976_120--Hb_002641_060 Hb_014834_150 Hb_014834_150 Hb_000976_120--Hb_014834_150 Hb_000107_230 Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.81407 2.14265 5.62678 5.79773 3.83628 3.97078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60119 4.2983 2.74889 3.21146 4.88344

CAGE analysis