Hb_000579_130

Information

Type -
Description -
Location Contig579: 148049-152479
Sequence    

Annotation

kegg
ID rcu:RCOM_1595670
description ubiquitin-protein ligase, putative
nr
ID XP_002510437.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7Z4
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1595670 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49777: 147485-152466 , PASA_asmbl_49778: 149259-149441 , PASA_asmbl_49779: 149635-149978 , PASA_asmbl_49780: 147323-152466
cDNA
(Sanger)
(ID:Location)		 052_F01.ab1: 148866-152466

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_130 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_001085_080 0.0609127016 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
3 Hb_010042_030 0.0667235144 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
4 Hb_001558_040 0.0734925581 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
5 Hb_016172_030 0.0794906996 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
6 Hb_007137_050 0.0797576142 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_002007_260 0.0797594962 - - beta-mannosidase, putative [Ricinus communis]
8 Hb_019280_010 0.0798965966 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
9 Hb_024650_080 0.0810193686 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
10 Hb_016461_020 0.0812952032 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001097_040 0.082542969 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
12 Hb_009615_160 0.0832537709 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
13 Hb_044486_020 0.084170388 - - CASTOR protein [Glycine max]
14 Hb_021165_010 0.0842989368 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
15 Hb_006910_060 0.0853143773 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
16 Hb_000085_450 0.0853253728 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
17 Hb_000085_260 0.086859279 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
18 Hb_001811_170 0.0875536535 - - dynamin, putative [Ricinus communis]
19 Hb_001114_110 0.0881504354 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
20 Hb_002995_040 0.0889251384 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_130 Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_000579_130--Hb_001085_080 Hb_010042_030 Hb_010042_030 Hb_000579_130--Hb_010042_030 Hb_001558_040 Hb_001558_040 Hb_000579_130--Hb_001558_040 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_007137_050 Hb_007137_050 Hb_000579_130--Hb_007137_050 Hb_002007_260 Hb_002007_260 Hb_000579_130--Hb_002007_260 Hb_001097_040 Hb_001097_040 Hb_001085_080--Hb_001097_040 Hb_001085_080--Hb_001558_040 Hb_158845_060 Hb_158845_060 Hb_001085_080--Hb_158845_060 Hb_002739_120 Hb_002739_120 Hb_001085_080--Hb_002739_120 Hb_001811_170 Hb_001811_170 Hb_001085_080--Hb_001811_170 Hb_000085_260 Hb_000085_260 Hb_010042_030--Hb_000085_260 Hb_001159_030 Hb_001159_030 Hb_010042_030--Hb_001159_030 Hb_005062_110 Hb_005062_110 Hb_010042_030--Hb_005062_110 Hb_010042_030--Hb_002007_260 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290 Hb_001307_240 Hb_001307_240 Hb_001558_040--Hb_001307_240 Hb_001558_040--Hb_002007_260 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_001558_040--Hb_158845_060 Hb_060980_010 Hb_060980_010 Hb_016172_030--Hb_060980_010 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_188063_050 Hb_188063_050 Hb_007137_050--Hb_188063_050 Hb_000085_450 Hb_000085_450 Hb_007137_050--Hb_000085_450 Hb_007137_050--Hb_001097_040 Hb_007137_050--Hb_010042_030 Hb_002740_090 Hb_002740_090 Hb_007137_050--Hb_002740_090 Hb_001246_130 Hb_001246_130 Hb_002007_260--Hb_001246_130 Hb_001085_290 Hb_001085_290 Hb_002007_260--Hb_001085_290 Hb_002007_260--Hb_001159_030 Hb_030982_010 Hb_030982_010 Hb_002007_260--Hb_030982_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31287 13.3237 10.2872 17.2941 5.17867 8.86584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.79753 4.62601 4.15986 12.6221 10.5206

CAGE analysis