Hb_000579_220

Information

Type -
Description -
Location Contig579: 242666-248531
Sequence    

Annotation

kegg
ID rcu:RCOM_1595300
description transcription factor, putative
nr
ID XP_002510430.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SFZ3
description Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2
trembl
ID B9R7Y7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1595300 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh110-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49789: 242664-242935 , PASA_asmbl_49790: 247607-248537
cDNA
(Sanger)
(ID:Location)		 050_P03.ab1: 242664-242935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_220 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_007237_090 0.0626809465 - - conserved hypothetical protein [Ricinus communis]
3 Hb_084127_010 0.0650341719 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_006615_190 0.0787211303 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
5 Hb_000172_010 0.0807111441 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
6 Hb_020648_020 0.0931697385 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
7 Hb_000521_210 0.093774109 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_000856_240 0.0971099585 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_002783_300 0.0992996051 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_149056_010 0.1059529285 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
11 Hb_009581_040 0.1089953696 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
12 Hb_001073_060 0.1207785103 - - phosphate transporter 1 [Hevea brasiliensis]
13 Hb_000338_030 0.1212734212 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
14 Hb_002219_090 0.1223924634 - - protein kinase atmrk1, putative [Ricinus communis]
15 Hb_002968_010 0.1234506749 - - PREDICTED: pectinesterase [Jatropha curcas]
16 Hb_000072_160 0.1250180114 - - proline oxidase [Manihot esculenta]
17 Hb_002329_030 0.1250213927 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
18 Hb_000521_290 0.125838859 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
19 Hb_000280_110 0.125892525 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_006198_060 0.1290326369 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_220 Hb_000579_220 Hb_007237_090 Hb_007237_090 Hb_000579_220--Hb_007237_090 Hb_084127_010 Hb_084127_010 Hb_000579_220--Hb_084127_010 Hb_006615_190 Hb_006615_190 Hb_000579_220--Hb_006615_190 Hb_000172_010 Hb_000172_010 Hb_000579_220--Hb_000172_010 Hb_020648_020 Hb_020648_020 Hb_000579_220--Hb_020648_020 Hb_000521_210 Hb_000521_210 Hb_000579_220--Hb_000521_210 Hb_007237_090--Hb_084127_010 Hb_007237_090--Hb_006615_190 Hb_000072_160 Hb_000072_160 Hb_007237_090--Hb_000072_160 Hb_007237_090--Hb_000172_010 Hb_007237_090--Hb_000521_210 Hb_084127_010--Hb_006615_190 Hb_084127_010--Hb_000521_210 Hb_074312_020 Hb_074312_020 Hb_084127_010--Hb_074312_020 Hb_084127_010--Hb_020648_020 Hb_006615_190--Hb_000072_160 Hb_006615_190--Hb_000172_010 Hb_002329_030 Hb_002329_030 Hb_006615_190--Hb_002329_030 Hb_001879_050 Hb_001879_050 Hb_000172_010--Hb_001879_050 Hb_000172_010--Hb_000072_160 Hb_000172_010--Hb_084127_010 Hb_002410_010 Hb_002410_010 Hb_020648_020--Hb_002410_010 Hb_000338_030 Hb_000338_030 Hb_020648_020--Hb_000338_030 Hb_000098_250 Hb_000098_250 Hb_020648_020--Hb_000098_250 Hb_065230_010 Hb_065230_010 Hb_020648_020--Hb_065230_010 Hb_000101_140 Hb_000101_140 Hb_000521_210--Hb_000101_140 Hb_000856_240 Hb_000856_240 Hb_000521_210--Hb_000856_240 Hb_000152_250 Hb_000152_250 Hb_000521_210--Hb_000152_250 Hb_000907_120 Hb_000907_120 Hb_000521_210--Hb_000907_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106827 16.4369 1.46129 4.43597 0.0515926 0.0291746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.36925 2.34632

CAGE analysis