Hb_000579_230

Information

Type -
Description -
Location Contig579: 254561-258604
Sequence    

Annotation

kegg
ID rcu:RCOM_1595290
description hypothetical protein
nr
ID XP_012071910.1
description PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
swissprot
ID Q93VH2
description Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
trembl
ID A0A067KQP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04471 PE=4 SV=1
Gene Ontology
ID GO:0004518
description bifunctional nuclease 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49791: 254631-258379 , PASA_asmbl_49792: 254612-258379 , PASA_asmbl_49794: 255066-255195
cDNA
(Sanger)
(ID:Location)		 003_O23.ab1: 254612-255684 , 007_C03.ab1: 254612-255757

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_230 0.0 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
2 Hb_012395_140 0.0492373563 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
3 Hb_002815_030 0.0492785138 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
4 Hb_000395_070 0.055257481 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
5 Hb_104061_020 0.0555110934 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
6 Hb_009270_020 0.0560252845 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
7 Hb_004676_010 0.0561815255 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
8 Hb_009615_170 0.0599056474 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
9 Hb_001754_040 0.0600404225 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
10 Hb_001821_090 0.0620095356 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
11 Hb_000207_180 0.0637294725 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
12 Hb_001550_060 0.0637308363 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
13 Hb_000740_100 0.0638566622 - - calpain, putative [Ricinus communis]
14 Hb_002107_070 0.0639263465 - - hypothetical protein RCOM_1598630 [Ricinus communis]
15 Hb_002329_040 0.0640280678 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
16 Hb_011618_090 0.0647136964 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_017862_020 0.0654612861 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
18 Hb_003058_060 0.0657249868 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
19 Hb_001343_040 0.0660238932 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
20 Hb_001814_030 0.066359586 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_230 Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_002107_070 Hb_002107_070 Hb_104061_020--Hb_002107_070 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020 Hb_009270_020--Hb_001814_030 Hb_000207_180 Hb_000207_180 Hb_009270_020--Hb_000207_180 Hb_007426_110 Hb_007426_110 Hb_009270_020--Hb_007426_110 Hb_000590_050 Hb_000590_050 Hb_009270_020--Hb_000590_050 Hb_000441_120 Hb_000441_120 Hb_009270_020--Hb_000441_120 Hb_004676_010--Hb_012395_140 Hb_000703_150 Hb_000703_150 Hb_004676_010--Hb_000703_150 Hb_009615_170 Hb_009615_170 Hb_004676_010--Hb_009615_170 Hb_004676_010--Hb_000395_070 Hb_001754_040 Hb_001754_040 Hb_004676_010--Hb_001754_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.0319 38.6579 22.6307 21.2728 31.3571 37.3011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1531 17.2775 23.742 40.5472 28.7099

CAGE analysis