Hb_000580_020

Information

Type -
Description -
Location Contig580: 11242-15929
Sequence    

Annotation

kegg
ID tcc:TCM_005516
description NAD(P)-binding Rossmann-fold superfamily protein
nr
ID CBI38845.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q40316
description Vestitone reductase OS=Medicago sativa PE=1 SV=1
trembl
ID A0A061DTX5
description NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_005516 PE=4 SV=1
Gene Ontology
ID GO:0045552
description vestitone reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49824: 11839-12778
cDNA
(Sanger)
(ID:Location)		 007_M03.ab1: 11871-12778 , 023_N16.ab1: 11839-12778 , 045_P17.ab1: 11949-12822 , 051_L08.ab1: 11915-12778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003124_150 0.0741730686 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
3 Hb_000310_020 0.0778207337 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
4 Hb_000505_130 0.0783898006 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
5 Hb_012565_070 0.0797801322 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
6 Hb_001931_010 0.0802336009 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
7 Hb_005167_010 0.080306196 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
8 Hb_000457_180 0.0807858347 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
9 Hb_000373_050 0.0828559617 - - PREDICTED: protein WHI3 [Jatropha curcas]
10 Hb_000976_120 0.084338427 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
11 Hb_003878_090 0.0844029696 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
12 Hb_006573_190 0.0849301807 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
13 Hb_044653_040 0.0857911252 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
14 Hb_000599_260 0.0871482755 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
15 Hb_001341_150 0.0891193003 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
16 Hb_001863_380 0.0897273113 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
17 Hb_000270_310 0.0901421477 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
18 Hb_003582_060 0.0907828129 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
19 Hb_000069_720 0.091375908 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
20 Hb_006615_240 0.0919785526 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]

Gene co-expression network

sample Hb_000580_020 Hb_000580_020 Hb_003124_150 Hb_003124_150 Hb_000580_020--Hb_003124_150 Hb_000310_020 Hb_000310_020 Hb_000580_020--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000580_020--Hb_000505_130 Hb_012565_070 Hb_012565_070 Hb_000580_020--Hb_012565_070 Hb_001931_010 Hb_001931_010 Hb_000580_020--Hb_001931_010 Hb_005167_010 Hb_005167_010 Hb_000580_020--Hb_005167_010 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000310_020--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000310_020--Hb_000221_190 Hb_000161_130 Hb_000161_130 Hb_000310_020--Hb_000161_130 Hb_006615_240 Hb_006615_240 Hb_000310_020--Hb_006615_240 Hb_004324_090 Hb_004324_090 Hb_000310_020--Hb_004324_090 Hb_000505_130--Hb_001931_010 Hb_000505_130--Hb_000221_190 Hb_044653_040 Hb_044653_040 Hb_000505_130--Hb_044653_040 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_001195_060 Hb_001195_060 Hb_005167_010--Hb_001195_060 Hb_012799_170 Hb_012799_170 Hb_005167_010--Hb_012799_170 Hb_006132_090 Hb_006132_090 Hb_005167_010--Hb_006132_090 Hb_000080_130 Hb_000080_130 Hb_005167_010--Hb_000080_130 Hb_004545_110 Hb_004545_110 Hb_005167_010--Hb_004545_110 Hb_007975_060 Hb_007975_060 Hb_005167_010--Hb_007975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.00233 7.94783 14.5853 12.3686 7.98434 4.83331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.714 17.9419 8.96308 7.81919 10.7884

CAGE analysis