Hb_000580_030

Information

Type -
Description -
Location Contig580: 19516-23312
Sequence    

Annotation

kegg
ID rcu:RCOM_1612000
description zinc finger protein, putative
nr
ID XP_012083578.1
description PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
swissprot
ID Q8VYP5
description Probable protein S-acyltransferase 14 OS=Arabidopsis thaliana GN=PAT14 PE=2 SV=1
trembl
ID A0A067JY22
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_14528 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49825: 19530-23224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_030 0.0 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
2 Hb_001489_100 0.0660004689 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
3 Hb_000890_030 0.0698409825 - - plastid CUL1 [Hevea brasiliensis]
4 Hb_007800_020 0.0763662305 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
5 Hb_027654_020 0.0768843147 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
6 Hb_005322_050 0.0789381752 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
7 Hb_001623_110 0.0791568106 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
8 Hb_002045_250 0.0817229115 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
9 Hb_000300_550 0.0821253485 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
10 Hb_002092_070 0.0826303459 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
11 Hb_044486_020 0.083267812 - - CASTOR protein [Glycine max]
12 Hb_000630_030 0.0841793667 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
13 Hb_000098_050 0.0863360326 - - BnaCnng11900D [Brassica napus]
14 Hb_000302_170 0.0874918157 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
15 Hb_010407_060 0.0894317937 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
16 Hb_002284_170 0.0905585774 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
17 Hb_000418_010 0.090754178 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
18 Hb_000069_480 0.0913365036 - - conserved hypothetical protein [Ricinus communis]
19 Hb_121089_030 0.0930600153 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
20 Hb_004204_130 0.0933753431 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000580_030 Hb_000580_030 Hb_001489_100 Hb_001489_100 Hb_000580_030--Hb_001489_100 Hb_000890_030 Hb_000890_030 Hb_000580_030--Hb_000890_030 Hb_007800_020 Hb_007800_020 Hb_000580_030--Hb_007800_020 Hb_027654_020 Hb_027654_020 Hb_000580_030--Hb_027654_020 Hb_005322_050 Hb_005322_050 Hb_000580_030--Hb_005322_050 Hb_001623_110 Hb_001623_110 Hb_000580_030--Hb_001623_110 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_012760_030 Hb_012760_030 Hb_000890_030--Hb_012760_030 Hb_016461_020 Hb_016461_020 Hb_000890_030--Hb_016461_020 Hb_000098_050 Hb_000098_050 Hb_000890_030--Hb_000098_050 Hb_044486_020 Hb_044486_020 Hb_000890_030--Hb_044486_020 Hb_000805_210 Hb_000805_210 Hb_000890_030--Hb_000805_210 Hb_000635_040 Hb_000635_040 Hb_007800_020--Hb_000635_040 Hb_000640_070 Hb_000640_070 Hb_007800_020--Hb_000640_070 Hb_005895_010 Hb_005895_010 Hb_007800_020--Hb_005895_010 Hb_000362_170 Hb_000362_170 Hb_007800_020--Hb_000362_170 Hb_000608_350 Hb_000608_350 Hb_007800_020--Hb_000608_350 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060 Hb_000120_910 Hb_000120_910 Hb_027654_020--Hb_000120_910 Hb_000300_550 Hb_000300_550 Hb_027654_020--Hb_000300_550 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_000046_600 Hb_000046_600 Hb_027654_020--Hb_000046_600 Hb_005322_050--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_005322_050--Hb_000302_170 Hb_172257_010 Hb_172257_010 Hb_005322_050--Hb_172257_010 Hb_007163_060 Hb_007163_060 Hb_005322_050--Hb_007163_060 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_005322_050--Hb_027654_020 Hb_001623_110--Hb_012760_030 Hb_001623_110--Hb_000300_550 Hb_006022_010 Hb_006022_010 Hb_001623_110--Hb_006022_010 Hb_001623_110--Hb_007800_020 Hb_001623_110--Hb_000805_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9546 18.2486 14.2274 22.0126 11.1861 10.116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8218 4.44122 5.26883 11.2842 9.1656

CAGE analysis