Hb_000580_060

Information

Type -
Description -
Location Contig580: 27798-28810
Sequence    

Annotation

kegg
ID rcu:RCOM_1611860
description hypothetical protein
nr
ID XP_012083583.1
description PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K923
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49828: 27804-29227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_060 0.0 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
2 Hb_010290_020 0.0973404159 - - RAB6-interacting protein, putative [Ricinus communis]
3 Hb_000441_230 0.1283835561 - - unnamed protein product [Coffea canephora]
4 Hb_004307_040 0.1327495853 - - -
5 Hb_000454_030 0.1363532523 - - -
6 Hb_003360_020 0.1373415442 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
7 Hb_005568_070 0.1403698483 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
8 Hb_000329_540 0.1435372411 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
9 Hb_000175_530 0.1480693214 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
10 Hb_003540_140 0.1486328964 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
11 Hb_001892_160 0.1511102394 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
12 Hb_156144_020 0.1587521284 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
13 Hb_001017_100 0.1628165467 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
14 Hb_000211_080 0.1631965022 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_005271_030 0.1641877303 - - copper-transporting atpase p-type, putative [Ricinus communis]
16 Hb_000352_130 0.1644294075 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
17 Hb_001146_070 0.1659872315 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
18 Hb_171554_020 0.1661136165 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
19 Hb_012150_070 0.1699982222 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
20 Hb_003226_170 0.1785158163 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000580_060 Hb_000580_060 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_000441_230 Hb_000441_230 Hb_000580_060--Hb_000441_230 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_005568_070 Hb_005568_070 Hb_000580_060--Hb_005568_070 Hb_010290_020--Hb_004307_040 Hb_003540_140 Hb_003540_140 Hb_010290_020--Hb_003540_140 Hb_010290_020--Hb_005568_070 Hb_010290_020--Hb_003360_020 Hb_000329_540 Hb_000329_540 Hb_010290_020--Hb_000329_540 Hb_000441_230--Hb_000329_540 Hb_000441_230--Hb_003540_140 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_004307_040--Hb_005568_070 Hb_027998_030 Hb_027998_030 Hb_004307_040--Hb_027998_030 Hb_004307_040--Hb_003540_140 Hb_004307_040--Hb_000329_540 Hb_000175_530 Hb_000175_530 Hb_000454_030--Hb_000175_530 Hb_000454_030--Hb_000441_230 Hb_001146_070 Hb_001146_070 Hb_000454_030--Hb_001146_070 Hb_000454_030--Hb_000329_540 Hb_000454_030--Hb_003226_170 Hb_002253_110 Hb_002253_110 Hb_003360_020--Hb_002253_110 Hb_003360_020--Hb_000441_230 Hb_003360_020--Hb_002506_110 Hb_000033_060 Hb_000033_060 Hb_003360_020--Hb_000033_060 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_005568_070--Hb_003540_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
521.888 32.5947 3.88197 6.46185 449.743 628.351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.0881 23.4446 19.8931 11.0848 5.43386

CAGE analysis