Hb_000580_120

Information

Type -
Description -
Location Contig580: 61166-78218
Sequence    

Annotation

kegg
ID tcc:TCM_005533
description Transketolase
nr
ID XP_012083595.1
description PREDICTED: transketolase, chloroplastic [Jatropha curcas]
swissprot
ID Q43848
description Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KAE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14540 PE=4 SV=1
Gene Ontology
ID GO:0004802
description chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49842: 62002-62551 , PASA_asmbl_49843: 61424-65938 , PASA_asmbl_49846: 65370-65577 , PASA_asmbl_49847: 74474-78174
cDNA
(Sanger)
(ID:Location)		 043_J18.ab1: 76876-78174

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_120 0.0 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
2 Hb_000120_080 0.0592059997 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
3 Hb_005634_010 0.0702569289 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000836_460 0.0769289731 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
5 Hb_000011_060 0.0805036818 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
6 Hb_000352_310 0.0835369035 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
7 Hb_000189_550 0.0862893773 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
8 Hb_000029_140 0.0879870678 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
9 Hb_000329_060 0.0885959938 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
10 Hb_003531_070 0.0906906219 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
11 Hb_002908_050 0.0929532201 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
12 Hb_006824_010 0.0931064854 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
13 Hb_010863_010 0.0934865702 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000984_170 0.09393875 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
15 Hb_001105_020 0.0953133461 - - expressed protein, putative [Ricinus communis]
16 Hb_001828_180 0.0974755027 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
17 Hb_000167_010 0.0975541671 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012393_030 0.0981118805 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
19 Hb_013726_090 0.0985883249 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
20 Hb_000120_370 0.0997268932 - - type 2 diacylglycerol acyltransferase [Ricinus communis]

Gene co-expression network

sample Hb_000580_120 Hb_000580_120 Hb_000120_080 Hb_000120_080 Hb_000580_120--Hb_000120_080 Hb_005634_010 Hb_005634_010 Hb_000580_120--Hb_005634_010 Hb_000836_460 Hb_000836_460 Hb_000580_120--Hb_000836_460 Hb_000011_060 Hb_000011_060 Hb_000580_120--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000580_120--Hb_000352_310 Hb_000189_550 Hb_000189_550 Hb_000580_120--Hb_000189_550 Hb_000029_140 Hb_000029_140 Hb_000120_080--Hb_000029_140 Hb_000120_080--Hb_000352_310 Hb_000120_080--Hb_000189_550 Hb_010863_010 Hb_010863_010 Hb_000120_080--Hb_010863_010 Hb_000120_080--Hb_000011_060 Hb_000556_120 Hb_000556_120 Hb_005634_010--Hb_000556_120 Hb_000140_290 Hb_000140_290 Hb_005634_010--Hb_000140_290 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_005634_010--Hb_000011_060 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060 Hb_000258_110 Hb_000258_110 Hb_000836_460--Hb_000258_110 Hb_000836_460--Hb_003544_060 Hb_004586_220 Hb_004586_220 Hb_000836_460--Hb_004586_220 Hb_003020_100 Hb_003020_100 Hb_000836_460--Hb_003020_100 Hb_000836_460--Hb_000329_060 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_000352_310--Hb_000011_060 Hb_000352_310--Hb_000189_550 Hb_001876_050 Hb_001876_050 Hb_000352_310--Hb_001876_050 Hb_027073_020 Hb_027073_020 Hb_000352_310--Hb_027073_020 Hb_003465_030 Hb_003465_030 Hb_000352_310--Hb_003465_030 Hb_001301_150 Hb_001301_150 Hb_000352_310--Hb_001301_150 Hb_000189_550--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000189_550--Hb_002908_050 Hb_000189_550--Hb_001105_020 Hb_000189_550--Hb_000011_060 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1269 22.4569 27.2696 34.4176 16.0623 16.5805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.9326 15.732 27.9862 48.2571 34.5276

CAGE analysis