Hb_000580_130

Information

Type -
Description -
Location Contig580: 79604-83402
Sequence    

Annotation

kegg
ID rcu:RCOM_1611350
description DNA repair and recombination protein radA, putative
nr
ID KDP28770.1
description hypothetical protein JCGZ_14541 [Jatropha curcas]
swissprot
ID Q8GXF0
description DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2
trembl
ID A0A067K931
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14541 PE=4 SV=1
Gene Ontology
ID GO:0000166
description dna repair protein rad51 homolog 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49848: 79526-82181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_130 0.0 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
2 Hb_000120_570 0.135969393 - - Mlo protein [Hevea brasiliensis]
3 Hb_001534_070 0.1392043931 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
4 Hb_001922_130 0.1410037368 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
5 Hb_003125_140 0.141259969 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
6 Hb_001703_130 0.1453503556 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
7 Hb_063409_020 0.1456647148 - - Calcium-binding protein, putative [Ricinus communis]
8 Hb_006631_010 0.146450096 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
9 Hb_001473_080 0.1476038384 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
10 Hb_000608_040 0.1485201646 - - -
11 Hb_000544_120 0.1532791442 - - PREDICTED: thymidylate kinase [Jatropha curcas]
12 Hb_004899_030 0.1539318892 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
13 Hb_004712_110 0.1594669418 - - 30S ribosomal protein S10, putative [Ricinus communis]
14 Hb_156144_030 0.1616786545 - - hypothetical protein RCOM_0187400 [Ricinus communis]
15 Hb_002805_170 0.1622469845 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
16 Hb_007951_100 0.1645767543 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_010883_080 0.1667554632 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
18 Hb_000040_050 0.1710732526 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
19 Hb_140595_010 0.1713469559 - - -
20 Hb_000173_210 0.174200858 - - PREDICTED: serine incorporator 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000580_130 Hb_000580_130 Hb_000120_570 Hb_000120_570 Hb_000580_130--Hb_000120_570 Hb_001534_070 Hb_001534_070 Hb_000580_130--Hb_001534_070 Hb_001922_130 Hb_001922_130 Hb_000580_130--Hb_001922_130 Hb_003125_140 Hb_003125_140 Hb_000580_130--Hb_003125_140 Hb_001703_130 Hb_001703_130 Hb_000580_130--Hb_001703_130 Hb_063409_020 Hb_063409_020 Hb_000580_130--Hb_063409_020 Hb_001473_080 Hb_001473_080 Hb_000120_570--Hb_001473_080 Hb_000120_570--Hb_001922_130 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_004374_150 Hb_004374_150 Hb_000120_570--Hb_004374_150 Hb_012340_020 Hb_012340_020 Hb_001534_070--Hb_012340_020 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_010068_030 Hb_010068_030 Hb_001534_070--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_001534_070--Hb_002918_310 Hb_006501_060 Hb_006501_060 Hb_001534_070--Hb_006501_060 Hb_001922_130--Hb_001473_080 Hb_010883_080 Hb_010883_080 Hb_001922_130--Hb_010883_080 Hb_001922_130--Hb_004374_150 Hb_000116_570 Hb_000116_570 Hb_001922_130--Hb_000116_570 Hb_000186_260 Hb_000186_260 Hb_001922_130--Hb_000186_260 Hb_007645_120 Hb_007645_120 Hb_003125_140--Hb_007645_120 Hb_003125_140--Hb_000120_570 Hb_156144_030 Hb_156144_030 Hb_003125_140--Hb_156144_030 Hb_000265_220 Hb_000265_220 Hb_003125_140--Hb_000265_220 Hb_002965_030 Hb_002965_030 Hb_003125_140--Hb_002965_030 Hb_002805_170 Hb_002805_170 Hb_001703_130--Hb_002805_170 Hb_001703_130--Hb_000116_570 Hb_001703_130--Hb_063409_020 Hb_001703_130--Hb_010883_080 Hb_000281_010 Hb_000281_010 Hb_001703_130--Hb_000281_010 Hb_001703_130--Hb_000685_080 Hb_000976_080 Hb_000976_080 Hb_063409_020--Hb_000976_080 Hb_001473_190 Hb_001473_190 Hb_063409_020--Hb_001473_190 Hb_005846_020 Hb_005846_020 Hb_063409_020--Hb_005846_020 Hb_063409_020--Hb_001473_080 Hb_004920_060 Hb_004920_060 Hb_063409_020--Hb_004920_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.037 7.17338 9.08696 1.89241 28.5215 12.4312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51075 2.1136 1.881 1.59206 1.00685

CAGE analysis