Hb_000580_160

Information

Type -
Description -
Location Contig580: 106298-109608
Sequence    

Annotation

kegg
ID pmum:103331766
description protein NRT1/ PTR FAMILY 7.3-like
nr
ID XP_010098931.1
description Nitrate transporter 1.5 [Morus notabilis]
swissprot
ID Q9LQL2
description Protein NRT1/ PTR FAMILY 7.3 OS=Arabidopsis thaliana GN=NPF7.3 PE=1 SV=2
trembl
ID W9RGT0
description Nitrate transporter 1.5 OS=Morus notabilis GN=L484_025587 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_160 0.0 - - Nitrate transporter 1.5 [Morus notabilis]
2 Hb_005276_100 0.1089589133 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
3 Hb_003023_050 0.109876947 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
4 Hb_006469_060 0.1108076702 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
5 Hb_012779_110 0.1112783558 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
6 Hb_004055_060 0.1153202999 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
7 Hb_002235_220 0.1285436136 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
8 Hb_000143_050 0.1291614045 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
9 Hb_001621_180 0.1318230839 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
10 Hb_001279_250 0.13701365 - - PREDICTED: pectate lyase-like [Jatropha curcas]
11 Hb_000052_010 0.1375836866 - - hypothetical protein M569_08416, partial [Genlisea aurea]
12 Hb_002221_080 0.1387731819 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
13 Hb_005615_070 0.1395713402 - - Rab7 [Hevea brasiliensis]
14 Hb_150299_030 0.140902584 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005410_030 0.1440412114 - - glutaredoxin 2 [Hevea brasiliensis]
16 Hb_151930_020 0.1453002934 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
17 Hb_007441_180 0.1496615186 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001252_140 0.1546324677 - - catalytic, putative [Ricinus communis]
19 Hb_000284_010 0.1613358163 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
20 Hb_000025_290 0.1615473799 - - Uncharacterized protein TCM_031320 [Theobroma cacao]

Gene co-expression network

sample Hb_000580_160 Hb_000580_160 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_003023_050 Hb_003023_050 Hb_000580_160--Hb_003023_050 Hb_006469_060 Hb_006469_060 Hb_000580_160--Hb_006469_060 Hb_012779_110 Hb_012779_110 Hb_000580_160--Hb_012779_110 Hb_004055_060 Hb_004055_060 Hb_000580_160--Hb_004055_060 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_000143_050 Hb_000143_050 Hb_005276_100--Hb_000143_050 Hb_000032_260 Hb_000032_260 Hb_005276_100--Hb_000032_260 Hb_000061_160 Hb_000061_160 Hb_005276_100--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_005276_100--Hb_001621_180 Hb_000853_360 Hb_000853_360 Hb_005276_100--Hb_000853_360 Hb_003023_050--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_003023_050--Hb_001279_250 Hb_000052_010 Hb_000052_010 Hb_003023_050--Hb_000052_010 Hb_003023_050--Hb_012779_110 Hb_028365_010 Hb_028365_010 Hb_003023_050--Hb_028365_010 Hb_001252_140 Hb_001252_140 Hb_006469_060--Hb_001252_140 Hb_007747_130 Hb_007747_130 Hb_006469_060--Hb_007747_130 Hb_005615_070 Hb_005615_070 Hb_006469_060--Hb_005615_070 Hb_006469_060--Hb_001621_180 Hb_006469_060--Hb_012779_110 Hb_002221_080 Hb_002221_080 Hb_012779_110--Hb_002221_080 Hb_000025_290 Hb_000025_290 Hb_012779_110--Hb_000025_290 Hb_012779_110--Hb_005276_100 Hb_004055_060--Hb_001279_250 Hb_004055_060--Hb_000052_010 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020 Hb_002235_220--Hb_006469_060 Hb_005410_030 Hb_005410_030 Hb_002235_220--Hb_005410_030 Hb_000184_180 Hb_000184_180 Hb_002235_220--Hb_000184_180 Hb_002235_220--Hb_000052_010 Hb_000284_010 Hb_000284_010 Hb_002235_220--Hb_000284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.962 0.159709 0.0331255 0.0798016 2.91941 2.51784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19746 9.51925 2.27886 0.108293 0.163817

CAGE analysis