Hb_000580_180

Information

Type -
Description -
Location Contig580: 123132-137963
Sequence    

Annotation

kegg
ID rcu:RCOM_1611200
description hypothetical protein
nr
ID XP_002511684.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD95
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1611200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49854: 123245-137969 , PASA_asmbl_49855: 123245-137969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005144_160 0.0432699258 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
3 Hb_011344_210 0.0531525101 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
4 Hb_001142_030 0.0538875834 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
5 Hb_000120_670 0.0552058753 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
6 Hb_002863_050 0.05608482 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_007691_030 0.0565411147 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
8 Hb_000215_110 0.0574431532 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
9 Hb_006455_120 0.0589235291 - - n6-DNA-methyltransferase, putative [Ricinus communis]
10 Hb_000331_550 0.0589979551 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
11 Hb_000603_150 0.0630336512 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
12 Hb_011995_010 0.0638585124 - - dc50, putative [Ricinus communis]
13 Hb_001408_040 0.0643027661 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
14 Hb_005357_080 0.065340462 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
15 Hb_000373_070 0.0663875073 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
16 Hb_001163_050 0.0667792235 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
17 Hb_000081_160 0.0667860482 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
18 Hb_000563_320 0.0684017378 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
19 Hb_003428_030 0.068831268 - - tRNA, putative [Ricinus communis]
20 Hb_010381_090 0.0689472994 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000580_180 Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_000580_180--Hb_005144_160 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_001142_030 Hb_001142_030 Hb_000580_180--Hb_001142_030 Hb_000120_670 Hb_000120_670 Hb_000580_180--Hb_000120_670 Hb_002863_050 Hb_002863_050 Hb_000580_180--Hb_002863_050 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_005144_160--Hb_007691_030 Hb_002200_080 Hb_002200_080 Hb_005144_160--Hb_002200_080 Hb_003177_030 Hb_003177_030 Hb_005144_160--Hb_003177_030 Hb_005144_160--Hb_002863_050 Hb_006634_070 Hb_006634_070 Hb_005144_160--Hb_006634_070 Hb_001009_270 Hb_001009_270 Hb_011344_210--Hb_001009_270 Hb_032208_090 Hb_032208_090 Hb_011344_210--Hb_032208_090 Hb_000815_320 Hb_000815_320 Hb_011344_210--Hb_000815_320 Hb_005846_040 Hb_005846_040 Hb_011344_210--Hb_005846_040 Hb_003126_050 Hb_003126_050 Hb_011344_210--Hb_003126_050 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_005496_140 Hb_005496_140 Hb_002863_050--Hb_005496_140 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0175 26.3483 28.2693 39.053 35.9696 37.1597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.878 46.5319 39.0283 29.0961 21.4486

CAGE analysis