Hb_000580_190

Information

Type -
Description -
Location Contig580: 146126-152088
Sequence    

Annotation

kegg
ID rcu:RCOM_1611160
description methionine aminopeptidase, putative (EC:3.4.11.18)
nr
ID XP_012083605.1
description PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
swissprot
ID Q9SLN5
description Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=1 SV=1
trembl
ID A0A067K183
description Methionine aminopeptidase 1 OS=Jatropha curcas GN=JCGZ_14549 PE=3 SV=1
Gene Ontology
ID GO:0022626
description methionine aminopeptidase 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49857: 149688-151882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_190 0.0 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
2 Hb_000264_170 0.0947615673 - - PREDICTED: uncharacterized protein LOC105649522 [Jatropha curcas]
3 Hb_000041_050 0.0949175139 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
4 Hb_004920_120 0.0973726415 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011671_180 0.1047193508 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
6 Hb_002810_030 0.104967764 - - hypothetical protein VITISV_015705 [Vitis vinifera]
7 Hb_007317_180 0.1064385713 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
8 Hb_001009_170 0.1079234845 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_001266_080 0.1079409628 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
10 Hb_000497_110 0.1082090011 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
11 Hb_004055_140 0.1085019732 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
12 Hb_009117_030 0.1087224723 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
13 Hb_061090_010 0.1091414073 - - RAN BINDING protein 1 [Populus trichocarpa]
14 Hb_006642_040 0.1115219392 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
15 Hb_007441_120 0.1118549128 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
16 Hb_007044_140 0.114942821 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
17 Hb_003697_030 0.1151237794 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
18 Hb_001635_060 0.1156340709 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
19 Hb_002477_330 0.1158035449 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
20 Hb_004218_110 0.1165403756 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]

Gene co-expression network

sample Hb_000580_190 Hb_000580_190 Hb_000264_170 Hb_000264_170 Hb_000580_190--Hb_000264_170 Hb_000041_050 Hb_000041_050 Hb_000580_190--Hb_000041_050 Hb_004920_120 Hb_004920_120 Hb_000580_190--Hb_004920_120 Hb_011671_180 Hb_011671_180 Hb_000580_190--Hb_011671_180 Hb_002810_030 Hb_002810_030 Hb_000580_190--Hb_002810_030 Hb_007317_180 Hb_007317_180 Hb_000580_190--Hb_007317_180 Hb_007044_140 Hb_007044_140 Hb_000264_170--Hb_007044_140 Hb_000032_100 Hb_000032_100 Hb_000264_170--Hb_000032_100 Hb_000445_420 Hb_000445_420 Hb_000264_170--Hb_000445_420 Hb_007441_120 Hb_007441_120 Hb_000264_170--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_000264_170--Hb_002016_110 Hb_000656_110 Hb_000656_110 Hb_000041_050--Hb_000656_110 Hb_000700_110 Hb_000700_110 Hb_000041_050--Hb_000700_110 Hb_000041_050--Hb_007441_120 Hb_001833_110 Hb_001833_110 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330 Hb_001009_170 Hb_001009_170 Hb_004920_120--Hb_001009_170 Hb_005490_030 Hb_005490_030 Hb_004920_120--Hb_005490_030 Hb_015934_070 Hb_015934_070 Hb_004920_120--Hb_015934_070 Hb_061090_010 Hb_061090_010 Hb_004920_120--Hb_061090_010 Hb_004218_110 Hb_004218_110 Hb_004920_120--Hb_004218_110 Hb_025240_040 Hb_025240_040 Hb_004920_120--Hb_025240_040 Hb_000497_110 Hb_000497_110 Hb_011671_180--Hb_000497_110 Hb_002000_080 Hb_002000_080 Hb_011671_180--Hb_002000_080 Hb_011671_180--Hb_001009_170 Hb_011671_180--Hb_004920_120 Hb_000252_200 Hb_000252_200 Hb_011671_180--Hb_000252_200 Hb_000031_120 Hb_000031_120 Hb_011671_180--Hb_000031_120 Hb_000914_070 Hb_000914_070 Hb_002810_030--Hb_000914_070 Hb_005117_010 Hb_005117_010 Hb_002810_030--Hb_005117_010 Hb_004055_140 Hb_004055_140 Hb_002810_030--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_002810_030--Hb_006641_010 Hb_011671_220 Hb_011671_220 Hb_002810_030--Hb_011671_220 Hb_004970_110 Hb_004970_110 Hb_007317_180--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.246 6.438 5.20311 11.9539 11.3772 33.2045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5331 16.2443 24.5083 24.7648 9.37178

CAGE analysis