Hb_000580_210

Information

Type -
Description -
Location Contig580: 169409-178777
Sequence    

Annotation

kegg
ID rcu:RCOM_1611010
description kinase, putative
nr
ID XP_012083610.1
description PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
swissprot
ID Q6NKQ9
description Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana GN=CRRSP15 PE=1 SV=1
trembl
ID A0A067JXV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14552 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cysteine-rich repeat secretory protein 15-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49858: 177701-178004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_210 0.0 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
2 Hb_005588_050 0.0940075411 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000482_080 0.1047374847 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
4 Hb_000173_180 0.1170473981 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
5 Hb_004158_040 0.1207885475 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
6 Hb_000991_060 0.1226729732 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
7 Hb_001541_170 0.1231854137 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
8 Hb_005183_070 0.123390081 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
9 Hb_000847_110 0.1238925527 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008406_170 0.1245434726 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_012787_020 0.125567993 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
12 Hb_006618_100 0.1257556507 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
13 Hb_001722_110 0.1277043923 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_000853_140 0.1305823997 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
15 Hb_007441_100 0.1326264048 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
16 Hb_001579_160 0.1335346913 - - PREDICTED: kininogen-1-like [Jatropha curcas]
17 Hb_001454_350 0.133965836 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
18 Hb_006252_070 0.1341145765 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
19 Hb_000920_120 0.134550368 - - -
20 Hb_005183_130 0.1350918266 - - glycogenin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000580_210 Hb_000580_210 Hb_005588_050 Hb_005588_050 Hb_000580_210--Hb_005588_050 Hb_000482_080 Hb_000482_080 Hb_000580_210--Hb_000482_080 Hb_000173_180 Hb_000173_180 Hb_000580_210--Hb_000173_180 Hb_004158_040 Hb_004158_040 Hb_000580_210--Hb_004158_040 Hb_000991_060 Hb_000991_060 Hb_000580_210--Hb_000991_060 Hb_001541_170 Hb_001541_170 Hb_000580_210--Hb_001541_170 Hb_005588_050--Hb_004158_040 Hb_005588_050--Hb_001541_170 Hb_001722_110 Hb_001722_110 Hb_005588_050--Hb_001722_110 Hb_001579_160 Hb_001579_160 Hb_005588_050--Hb_001579_160 Hb_012787_020 Hb_012787_020 Hb_005588_050--Hb_012787_020 Hb_000362_030 Hb_000362_030 Hb_000482_080--Hb_000362_030 Hb_004657_070 Hb_004657_070 Hb_000482_080--Hb_004657_070 Hb_004586_440 Hb_004586_440 Hb_000482_080--Hb_004586_440 Hb_005183_130 Hb_005183_130 Hb_000482_080--Hb_005183_130 Hb_000608_090 Hb_000608_090 Hb_000482_080--Hb_000608_090 Hb_000173_180--Hb_005588_050 Hb_000173_180--Hb_001722_110 Hb_049453_010 Hb_049453_010 Hb_000173_180--Hb_049453_010 Hb_000339_060 Hb_000339_060 Hb_000173_180--Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_000173_180--Hb_003638_020 Hb_004158_040--Hb_001579_160 Hb_004158_040--Hb_001722_110 Hb_001454_350 Hb_001454_350 Hb_004158_040--Hb_001454_350 Hb_010217_020 Hb_010217_020 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100 Hb_006252_070 Hb_006252_070 Hb_000991_060--Hb_006252_070 Hb_027411_030 Hb_027411_030 Hb_000991_060--Hb_027411_030 Hb_000291_240 Hb_000291_240 Hb_000991_060--Hb_000291_240 Hb_001296_010 Hb_001296_010 Hb_000991_060--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_000991_060--Hb_013399_060 Hb_004757_010 Hb_004757_010 Hb_000991_060--Hb_004757_010 Hb_001541_170--Hb_001579_160 Hb_000098_230 Hb_000098_230 Hb_001541_170--Hb_000098_230 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_001541_170--Hb_004158_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0749621 0.901058 0.27955 7.77675 0.0750155 0.0822718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0457734 0 0.06661 0.130062 1.70354

CAGE analysis