Hb_000581_010

Information

Type -
Description -
Location Contig581: 46474-48644
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09310g
description POPTRDRAFT_819189; proton-dependent oligopeptide transport family protein
nr
ID XP_012087983.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
swissprot
ID Q9M331
description Protein NRT1/ PTR FAMILY 5.7 OS=Arabidopsis thaliana GN=NPF5.7 PE=2 SV=2
trembl
ID B9HC55
description Proton-dependent oligopeptide transport family protein OS=Populus trichocarpa GN=POPTR_0006s09310g PE=3 SV=2
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49867: 46430-46898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000581_010 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
2 Hb_000487_350 0.0085917728 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027577_010 0.0399640441 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
4 Hb_002031_020 0.0446549208 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
5 Hb_180518_010 0.0533137627 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
6 Hb_000729_040 0.0653648402 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
7 Hb_001856_250 0.0675682067 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
8 Hb_000483_340 0.0787467002 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000422_090 0.0788114465 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002734_020 0.0792547802 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
11 Hb_002785_020 0.0799314198 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_003788_030 0.0840566438 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_000462_120 0.085605355 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
14 Hb_000594_010 0.0864050525 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
15 Hb_004030_040 0.0874585895 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
16 Hb_002757_030 0.0874856367 - - unnamed protein product [Vitis vinifera]
17 Hb_002636_170 0.0908978844 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
18 Hb_009164_010 0.0916256872 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
19 Hb_000696_130 0.0928030175 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_004884_040 0.0929541789 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]

Gene co-expression network

sample Hb_000581_010 Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_000581_010--Hb_000487_350 Hb_027577_010 Hb_027577_010 Hb_000581_010--Hb_027577_010 Hb_002031_020 Hb_002031_020 Hb_000581_010--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000581_010--Hb_180518_010 Hb_000729_040 Hb_000729_040 Hb_000581_010--Hb_000729_040 Hb_001856_250 Hb_001856_250 Hb_000581_010--Hb_001856_250 Hb_000487_350--Hb_027577_010 Hb_000487_350--Hb_002031_020 Hb_000487_350--Hb_180518_010 Hb_000487_350--Hb_001856_250 Hb_000487_350--Hb_000729_040 Hb_027577_010--Hb_180518_010 Hb_027577_010--Hb_001856_250 Hb_027577_010--Hb_000729_040 Hb_000483_340 Hb_000483_340 Hb_027577_010--Hb_000483_340 Hb_002031_020--Hb_180518_010 Hb_002031_020--Hb_027577_010 Hb_188281_020 Hb_188281_020 Hb_002031_020--Hb_188281_020 Hb_000188_040 Hb_000188_040 Hb_002031_020--Hb_000188_040 Hb_005291_020 Hb_005291_020 Hb_180518_010--Hb_005291_020 Hb_103468_010 Hb_103468_010 Hb_180518_010--Hb_103468_010 Hb_000729_040--Hb_001856_250 Hb_000462_120 Hb_000462_120 Hb_000729_040--Hb_000462_120 Hb_000729_040--Hb_000483_340 Hb_001856_250--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_001856_250--Hb_002734_020 Hb_004884_040 Hb_004884_040 Hb_001856_250--Hb_004884_040 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0677273 0.277041 10.8821 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.137739 2.65488

CAGE analysis