Hb_000581_030

Information

Type -
Description -
Location Contig581: 103327-106809
Sequence    

Annotation

kegg
ID rcu:RCOM_0913490
description hypothetical protein
nr
ID XP_002517181.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F6HDM2
description ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Vitis vinifera GN=VIT_05s0020g02800 PE=3 SV=1
trembl
ID B9RTW2
description ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Ricinus communis GN=RCOM_0913490 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent -nad h-hydrate dehydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49868: 103269-106839 , PASA_asmbl_49869: 105398-105610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000581_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000003_030 0.1046411475 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_019654_060 0.1088019662 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
4 Hb_000940_210 0.1121275247 - - cyclophilin [Hevea brasiliensis]
5 Hb_000237_020 0.1150700457 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
6 Hb_004032_210 0.1159282454 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003740_020 0.1224231501 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_003929_180 0.1271627535 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
9 Hb_001545_130 0.1298987013 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_006351_020 0.1323431998 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_003430_080 0.1332921106 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000740_090 0.1360765812 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000134_120 0.139153987 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
14 Hb_004545_040 0.1394068694 - - PREDICTED: coiled-coil domain-containing protein SCD2-like [Jatropha curcas]
15 Hb_034507_060 0.1398541596 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
16 Hb_004223_140 0.1398951578 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
17 Hb_004218_130 0.1403516053 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
18 Hb_011214_110 0.1411976507 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_164010_050 0.1433182782 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
20 Hb_000926_340 0.1437510546 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000581_030 Hb_000581_030 Hb_000003_030 Hb_000003_030 Hb_000581_030--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_000581_030--Hb_019654_060 Hb_000940_210 Hb_000940_210 Hb_000581_030--Hb_000940_210 Hb_000237_020 Hb_000237_020 Hb_000581_030--Hb_000237_020 Hb_004032_210 Hb_004032_210 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_001545_130 Hb_001545_130 Hb_000003_030--Hb_001545_130 Hb_000003_030--Hb_019654_060 Hb_003430_080 Hb_003430_080 Hb_000003_030--Hb_003430_080 Hb_000003_030--Hb_004032_210 Hb_000000_330 Hb_000000_330 Hb_000003_030--Hb_000000_330 Hb_019654_060--Hb_004032_210 Hb_011214_110 Hb_011214_110 Hb_019654_060--Hb_011214_110 Hb_002942_230 Hb_002942_230 Hb_019654_060--Hb_002942_230 Hb_008025_010 Hb_008025_010 Hb_019654_060--Hb_008025_010 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210 Hb_000307_220 Hb_000307_220 Hb_000237_020--Hb_000307_220 Hb_000917_240 Hb_000917_240 Hb_000237_020--Hb_000917_240 Hb_000237_020--Hb_003430_080 Hb_000237_020--Hb_000940_210 Hb_000237_020--Hb_019654_060 Hb_003929_180 Hb_003929_180 Hb_004032_210--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_004032_210--Hb_004223_140 Hb_004032_210--Hb_001545_130 Hb_006351_020 Hb_006351_020 Hb_004032_210--Hb_006351_020 Hb_005357_110 Hb_005357_110 Hb_003740_020--Hb_005357_110 Hb_029253_010 Hb_029253_010 Hb_003740_020--Hb_029253_010 Hb_021409_070 Hb_021409_070 Hb_003740_020--Hb_021409_070 Hb_005511_130 Hb_005511_130 Hb_003740_020--Hb_005511_130 Hb_004730_020 Hb_004730_020 Hb_003740_020--Hb_004730_020 Hb_000032_410 Hb_000032_410 Hb_003740_020--Hb_000032_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20414 1.16617 5.44815 8.17874 0.896953 0.968172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588524 0.925865 0.429924 3.04832 2.18617

CAGE analysis