Hb_000584_020

Information

Type -
Description -
Location Contig584: 62523-63272
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G233500g
description hypothetical protein
nr
ID XP_007159382.1
description hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
swissprot
ID O22860
description 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1
trembl
ID V7CR14
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G233500g PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49907: 62530-66583
cDNA
(Sanger)
(ID:Location)		 006_H08.ab1: 62541-66583 , 013_E07.ab1: 62535-66536 , 013_E22.ab1: 62542-66582 , 015_O18.ab1: 62535-66537 , 020_N18.ab1: 62530-66536

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000584_020 0.0 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
2 Hb_001357_100 0.1160809035 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
3 Hb_178227_010 0.122813309 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
4 Hb_000473_020 0.1276381611 - - expressed protein, putative [Ricinus communis]
5 Hb_001754_070 0.1278526723 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
6 Hb_005667_040 0.1474548753 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
7 Hb_000352_290 0.1512544218 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
8 Hb_016604_030 0.1556733989 - - histone H4 [Zea mays]
9 Hb_000268_010 0.1591915388 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000243_040 0.1594079544 - - -
11 Hb_014783_010 0.1635806434 - - cold-inducible RNA binding protein, putative [Ricinus communis]
12 Hb_003536_110 0.1644348996 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
13 Hb_124055_010 0.1665999761 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
14 Hb_001538_090 0.1673526848 - - 40S ribosomal protein S29 [Morus notabilis]
15 Hb_014720_040 0.1681749435 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
16 Hb_001488_400 0.1688006421 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
17 Hb_002289_120 0.1693697207 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
18 Hb_082407_010 0.1694516233 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
19 Hb_078185_010 0.1697314273 - - -
20 Hb_001220_010 0.170732548 - - hypothetical protein JCGZ_00411 [Jatropha curcas]

Gene co-expression network

sample Hb_000584_020 Hb_000584_020 Hb_001357_100 Hb_001357_100 Hb_000584_020--Hb_001357_100 Hb_178227_010 Hb_178227_010 Hb_000584_020--Hb_178227_010 Hb_000473_020 Hb_000473_020 Hb_000584_020--Hb_000473_020 Hb_001754_070 Hb_001754_070 Hb_000584_020--Hb_001754_070 Hb_005667_040 Hb_005667_040 Hb_000584_020--Hb_005667_040 Hb_000352_290 Hb_000352_290 Hb_000584_020--Hb_000352_290 Hb_014783_010 Hb_014783_010 Hb_001357_100--Hb_014783_010 Hb_001357_100--Hb_000473_020 Hb_001357_100--Hb_178227_010 Hb_003536_110 Hb_003536_110 Hb_001357_100--Hb_003536_110 Hb_000268_010 Hb_000268_010 Hb_001357_100--Hb_000268_010 Hb_002900_160 Hb_002900_160 Hb_178227_010--Hb_002900_160 Hb_178227_010--Hb_014783_010 Hb_007044_130 Hb_007044_130 Hb_178227_010--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_178227_010--Hb_002783_270 Hb_009476_020 Hb_009476_020 Hb_178227_010--Hb_009476_020 Hb_000473_020--Hb_003536_110 Hb_000473_020--Hb_005667_040 Hb_005000_330 Hb_005000_330 Hb_000473_020--Hb_005000_330 Hb_004195_080 Hb_004195_080 Hb_000473_020--Hb_004195_080 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000359_150 Hb_000359_150 Hb_000473_020--Hb_000359_150 Hb_140543_010 Hb_140543_010 Hb_001754_070--Hb_140543_010 Hb_130235_010 Hb_130235_010 Hb_001754_070--Hb_130235_010 Hb_001754_070--Hb_005667_040 Hb_001158_150 Hb_001158_150 Hb_001754_070--Hb_001158_150 Hb_004125_110 Hb_004125_110 Hb_001754_070--Hb_004125_110 Hb_000326_090 Hb_000326_090 Hb_001754_070--Hb_000326_090 Hb_002686_110 Hb_002686_110 Hb_005667_040--Hb_002686_110 Hb_004709_010 Hb_004709_010 Hb_005667_040--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_005667_040--Hb_014720_040 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_000352_290--Hb_001754_070 Hb_001842_050 Hb_001842_050 Hb_000352_290--Hb_001842_050 Hb_000352_290--Hb_004125_110 Hb_000084_260 Hb_000084_260 Hb_000352_290--Hb_000084_260 Hb_000352_290--Hb_178227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.767 76.4096 197.549 539.97 119.035 362.918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
290.022 867.764 121.149 70.68 51.1031

CAGE analysis