Hb_000586_060

Information

Type -
Description -
Location Contig586: 73442-74917
Sequence    

Annotation

kegg
ID tcc:TCM_001135
description VQ motif-containing protein
nr
ID XP_011022779.1
description PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061DJL3
description VQ motif-containing protein OS=Theobroma cacao GN=TCM_001135 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000586_060 0.0 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
2 Hb_011218_050 0.1676827071 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_000532_130 0.1908438465 - - hypothetical protein [Anabaena sp. PCC 7108]
4 Hb_002609_150 0.1925031144 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
5 Hb_000984_100 0.1978082192 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_010253_020 0.2009676377 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_001148_040 0.2097510299 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
8 Hb_000431_030 0.2103297355 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
9 Hb_042553_010 0.2128677844 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
10 Hb_140848_010 0.2135915578 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
11 Hb_001103_040 0.2159240474 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
12 Hb_000236_120 0.2161026332 - - -
13 Hb_003371_260 0.2197117207 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
14 Hb_001408_150 0.2204655648 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
15 Hb_000007_160 0.2220978166 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
16 Hb_001879_050 0.2289492605 - - Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_000172_010 0.2294961375 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
18 Hb_001608_030 0.2309733713 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
19 Hb_002739_060 0.2312492224 - - -
20 Hb_009913_010 0.2320363963 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000586_060 Hb_000586_060 Hb_011218_050 Hb_011218_050 Hb_000586_060--Hb_011218_050 Hb_000532_130 Hb_000532_130 Hb_000586_060--Hb_000532_130 Hb_002609_150 Hb_002609_150 Hb_000586_060--Hb_002609_150 Hb_000984_100 Hb_000984_100 Hb_000586_060--Hb_000984_100 Hb_010253_020 Hb_010253_020 Hb_000586_060--Hb_010253_020 Hb_001148_040 Hb_001148_040 Hb_000586_060--Hb_001148_040 Hb_005380_030 Hb_005380_030 Hb_011218_050--Hb_005380_030 Hb_017417_030 Hb_017417_030 Hb_011218_050--Hb_017417_030 Hb_002248_090 Hb_002248_090 Hb_011218_050--Hb_002248_090 Hb_051100_010 Hb_051100_010 Hb_011218_050--Hb_051100_010 Hb_011218_050--Hb_002609_150 Hb_002739_060 Hb_002739_060 Hb_000532_130--Hb_002739_060 Hb_007253_040 Hb_007253_040 Hb_000532_130--Hb_007253_040 Hb_008175_030 Hb_008175_030 Hb_000532_130--Hb_008175_030 Hb_001408_150 Hb_001408_150 Hb_000532_130--Hb_001408_150 Hb_000532_130--Hb_002609_150 Hb_060909_010 Hb_060909_010 Hb_000532_130--Hb_060909_010 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_002609_150--Hb_001148_040 Hb_000007_160 Hb_000007_160 Hb_002609_150--Hb_000007_160 Hb_000172_010 Hb_000172_010 Hb_002609_150--Hb_000172_010 Hb_002609_150--Hb_002739_060 Hb_000984_100--Hb_001879_050 Hb_000544_020 Hb_000544_020 Hb_000984_100--Hb_000544_020 Hb_001608_030 Hb_001608_030 Hb_000984_100--Hb_001608_030 Hb_002571_010 Hb_002571_010 Hb_000984_100--Hb_002571_010 Hb_003371_260 Hb_003371_260 Hb_000984_100--Hb_003371_260 Hb_004466_070 Hb_004466_070 Hb_000984_100--Hb_004466_070 Hb_000778_020 Hb_000778_020 Hb_010253_020--Hb_000778_020 Hb_000083_130 Hb_000083_130 Hb_010253_020--Hb_000083_130 Hb_000189_120 Hb_000189_120 Hb_010253_020--Hb_000189_120 Hb_057079_020 Hb_057079_020 Hb_010253_020--Hb_057079_020 Hb_001071_060 Hb_001071_060 Hb_010253_020--Hb_001071_060 Hb_002928_120 Hb_002928_120 Hb_010253_020--Hb_002928_120 Hb_001148_040--Hb_000007_160 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_001148_040--Hb_000778_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12036 10.2545 0.169152 4.40462 0.472324 0.521958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.4376 0.994222

CAGE analysis