Hb_000586_100

Information

Type -
Description -
Location Contig586: 178407-179251
Sequence    

Annotation

kegg
ID rcu:RCOM_0198090
description hypothetical protein
nr
ID XP_002533143.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4H4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0198090 PE=4 SV=1
Gene Ontology
ID GO:0005773
description lipase plat lh2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49977: 178426-179209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000586_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_013914_020 0.0667340478 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_003439_090 0.0668456602 - - kinase, putative [Ricinus communis]
4 Hb_000407_080 0.081466902 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
5 Hb_006020_010 0.084993139 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
6 Hb_006364_020 0.0859300009 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
7 Hb_003052_120 0.0941139692 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
8 Hb_130967_010 0.10065939 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_134017_010 0.1063937673 - - kinase, putative [Ricinus communis]
10 Hb_003430_020 0.1138929294 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
11 Hb_009581_050 0.1157059672 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
12 Hb_008001_020 0.1179789341 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
13 Hb_000152_250 0.1196952079 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
14 Hb_000111_190 0.1221855875 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
15 Hb_000907_120 0.1223228773 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
16 Hb_008406_020 0.1230131458 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
17 Hb_003788_010 0.1249631066 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_001856_160 0.1289324978 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003376_200 0.1293262924 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_012807_060 0.1316100219 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000586_100 Hb_000586_100 Hb_013914_020 Hb_013914_020 Hb_000586_100--Hb_013914_020 Hb_003439_090 Hb_003439_090 Hb_000586_100--Hb_003439_090 Hb_000407_080 Hb_000407_080 Hb_000586_100--Hb_000407_080 Hb_006020_010 Hb_006020_010 Hb_000586_100--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000586_100--Hb_006364_020 Hb_003052_120 Hb_003052_120 Hb_000586_100--Hb_003052_120 Hb_013914_020--Hb_000407_080 Hb_013914_020--Hb_003439_090 Hb_000045_180 Hb_000045_180 Hb_013914_020--Hb_000045_180 Hb_017866_020 Hb_017866_020 Hb_013914_020--Hb_017866_020 Hb_013914_020--Hb_003052_120 Hb_134017_010 Hb_134017_010 Hb_003439_090--Hb_134017_010 Hb_003439_090--Hb_000045_180 Hb_003430_020 Hb_003430_020 Hb_003439_090--Hb_003430_020 Hb_003439_090--Hb_000407_080 Hb_009581_050 Hb_009581_050 Hb_000407_080--Hb_009581_050 Hb_000407_080--Hb_134017_010 Hb_003807_020 Hb_003807_020 Hb_000407_080--Hb_003807_020 Hb_000907_120 Hb_000907_120 Hb_006020_010--Hb_000907_120 Hb_006020_010--Hb_003439_090 Hb_006020_010--Hb_000407_080 Hb_000152_250 Hb_000152_250 Hb_006020_010--Hb_000152_250 Hb_006020_010--Hb_006364_020 Hb_000111_190 Hb_000111_190 Hb_006364_020--Hb_000111_190 Hb_001823_070 Hb_001823_070 Hb_006364_020--Hb_001823_070 Hb_130967_010 Hb_130967_010 Hb_006364_020--Hb_130967_010 Hb_006364_020--Hb_000907_120 Hb_006364_020--Hb_003439_090 Hb_012807_060 Hb_012807_060 Hb_003052_120--Hb_012807_060 Hb_003052_120--Hb_009581_050 Hb_003052_120--Hb_000407_080 Hb_002551_090 Hb_002551_090 Hb_003052_120--Hb_002551_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182521 23.6362 3.69142 19.8805 0.171222 0.213868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 25.0575 2.31495

CAGE analysis