Hb_000589_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig589: 36162-38418
Sequence    

Annotation

kegg
ID pop:POPTR_0019s00390g
description hypothetical protein
nr
ID KDP38942.1
description hypothetical protein JCGZ_00699 [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067KS33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00699 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_060 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
2 Hb_011932_010 0.1463453092 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
3 Hb_000179_180 0.1599240163 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
4 Hb_009393_200 0.1627135285 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
5 Hb_016006_010 0.1633299594 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000122_010 0.172743027 - - amino acid transporter, putative [Ricinus communis]
7 Hb_001486_020 0.1744606722 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
8 Hb_073973_030 0.1839823362 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
9 Hb_005656_080 0.185724665 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
10 Hb_000059_200 0.1878678853 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
11 Hb_001484_100 0.1882512992 - - PREDICTED: cyanate hydratase [Jatropha curcas]
12 Hb_012753_210 0.188425631 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
13 Hb_000637_140 0.190388077 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
14 Hb_007163_060 0.1909456844 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
15 Hb_002248_130 0.1927828472 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
16 Hb_006502_020 0.1936281738 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
17 Hb_000046_080 0.1954878149 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
18 Hb_170674_010 0.1966336819 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
19 Hb_010053_040 0.1968068248 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
20 Hb_182249_010 0.1973974085 - - -

Gene co-expression network

sample Hb_000589_060 Hb_000589_060 Hb_011932_010 Hb_011932_010 Hb_000589_060--Hb_011932_010 Hb_000179_180 Hb_000179_180 Hb_000589_060--Hb_000179_180 Hb_009393_200 Hb_009393_200 Hb_000589_060--Hb_009393_200 Hb_016006_010 Hb_016006_010 Hb_000589_060--Hb_016006_010 Hb_000122_010 Hb_000122_010 Hb_000589_060--Hb_000122_010 Hb_001486_020 Hb_001486_020 Hb_000589_060--Hb_001486_020 Hb_011932_010--Hb_000179_180 Hb_011932_010--Hb_016006_010 Hb_001484_100 Hb_001484_100 Hb_011932_010--Hb_001484_100 Hb_005656_080 Hb_005656_080 Hb_011932_010--Hb_005656_080 Hb_000205_130 Hb_000205_130 Hb_011932_010--Hb_000205_130 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000152_640 Hb_000152_640 Hb_000179_180--Hb_000152_640 Hb_000179_180--Hb_009393_200 Hb_000179_180--Hb_001484_100 Hb_009393_200--Hb_000122_010 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_000099_090 Hb_000099_090 Hb_016006_010--Hb_000099_090 Hb_073973_030 Hb_073973_030 Hb_016006_010--Hb_073973_030 Hb_016006_010--Hb_001484_100 Hb_000890_010 Hb_000890_010 Hb_016006_010--Hb_000890_010 Hb_000186_330 Hb_000186_330 Hb_000122_010--Hb_000186_330 Hb_007163_060 Hb_007163_060 Hb_000122_010--Hb_007163_060 Hb_000122_010--Hb_008511_060 Hb_000122_010--Hb_010053_040 Hb_000122_010--Hb_005656_080 Hb_089140_120 Hb_089140_120 Hb_001486_020--Hb_089140_120 Hb_001221_220 Hb_001221_220 Hb_001486_020--Hb_001221_220 Hb_102291_010 Hb_102291_010 Hb_001486_020--Hb_102291_010 Hb_009545_090 Hb_009545_090 Hb_001486_020--Hb_009545_090 Hb_001911_040 Hb_001911_040 Hb_001486_020--Hb_001911_040 Hb_000991_040 Hb_000991_040 Hb_001486_020--Hb_000991_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136318 0.32289 0.349566 0.282194 0.130701 0.265081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0804558 0.094961 0.0300922 0.00629074 0.0670894

CAGE analysis