Hb_000589_100

Information

Type -
Description -
Location Contig589: 53870-56924
Sequence    

Annotation

kegg
ID rcu:RCOM_0000910
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002533148.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID B9T4H9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0000910 PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50067: 54065-56905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_100 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000005_350 0.0717563726 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
3 Hb_011861_020 0.0897130537 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
4 Hb_000723_240 0.0958700653 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
5 Hb_028927_010 0.0975502934 - - leucine-rich repeat protein, putative [Ricinus communis]
6 Hb_000025_740 0.0995939231 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
7 Hb_001691_060 0.1024210163 - - lipoxygenase, putative [Ricinus communis]
8 Hb_000684_490 0.1042158491 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
9 Hb_116469_010 0.1058751044 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
10 Hb_010334_040 0.1101028668 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
11 Hb_000471_010 0.1115355944 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001922_010 0.1126414884 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
13 Hb_002749_070 0.1154162343 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
14 Hb_008418_010 0.1170292897 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
15 Hb_131864_020 0.1179014716 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
16 Hb_164283_010 0.120798139 - - hypothetical protein RCOM_0725500 [Ricinus communis]
17 Hb_011145_020 0.1230015229 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
18 Hb_007313_010 0.1259354763 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
19 Hb_000057_180 0.1262351625 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
20 Hb_001660_040 0.1272171588 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_100 Hb_000589_100 Hb_000005_350 Hb_000005_350 Hb_000589_100--Hb_000005_350 Hb_011861_020 Hb_011861_020 Hb_000589_100--Hb_011861_020 Hb_000723_240 Hb_000723_240 Hb_000589_100--Hb_000723_240 Hb_028927_010 Hb_028927_010 Hb_000589_100--Hb_028927_010 Hb_000025_740 Hb_000025_740 Hb_000589_100--Hb_000025_740 Hb_001691_060 Hb_001691_060 Hb_000589_100--Hb_001691_060 Hb_000005_350--Hb_011861_020 Hb_010334_040 Hb_010334_040 Hb_000005_350--Hb_010334_040 Hb_000684_490 Hb_000684_490 Hb_000005_350--Hb_000684_490 Hb_116469_010 Hb_116469_010 Hb_000005_350--Hb_116469_010 Hb_000005_350--Hb_001691_060 Hb_000471_010 Hb_000471_010 Hb_011861_020--Hb_000471_010 Hb_150730_010 Hb_150730_010 Hb_011861_020--Hb_150730_010 Hb_011861_020--Hb_116469_010 Hb_000057_180 Hb_000057_180 Hb_011861_020--Hb_000057_180 Hb_011861_020--Hb_000684_490 Hb_003160_050 Hb_003160_050 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_008418_010 Hb_008418_010 Hb_000723_240--Hb_008418_010 Hb_001922_010 Hb_001922_010 Hb_000723_240--Hb_001922_010 Hb_028927_010--Hb_116469_010 Hb_028927_010--Hb_000057_180 Hb_028927_010--Hb_011861_020 Hb_028927_010--Hb_000723_240 Hb_006573_260 Hb_006573_260 Hb_028927_010--Hb_006573_260 Hb_002749_070 Hb_002749_070 Hb_000025_740--Hb_002749_070 Hb_000025_740--Hb_010334_040 Hb_000025_740--Hb_000005_350 Hb_001104_210 Hb_001104_210 Hb_000025_740--Hb_001104_210 Hb_004544_070 Hb_004544_070 Hb_000025_740--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_000025_740--Hb_164283_010 Hb_011145_020 Hb_011145_020 Hb_001691_060--Hb_011145_020 Hb_000075_030 Hb_000075_030 Hb_001691_060--Hb_000075_030 Hb_000917_330 Hb_000917_330 Hb_001691_060--Hb_000917_330 Hb_001691_060--Hb_001922_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0342238 2.25541 4.37459 4.09666 0.0213625 0.0422764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0259509 0 0.0771565 19.1953 1.41832

CAGE analysis