Hb_000589_110

Information

Type -
Description -
Location Contig589: 57287-61587
Sequence    

Annotation

kegg
ID rcu:RCOM_0000920
description catalytic, putative
nr
ID XP_012089158.1
description PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
swissprot
ID B0C9F4
description Probable dual-specificity RNA methyltransferase RlmN OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1
trembl
ID B9T4I0
description Catalytic, putative OS=Ricinus communis GN=RCOM_0000920 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ribosomal rna large subunit methyltransferase n

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50067: 54065-56905 , PASA_asmbl_50069: 57362-60426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_110 0.0 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
2 Hb_007769_040 0.0828858367 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_013405_080 0.0844748855 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
4 Hb_005250_010 0.0921182215 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
5 Hb_025477_050 0.0923619677 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_007192_090 0.0983223036 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
7 Hb_000555_020 0.0994765793 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
8 Hb_001660_120 0.0997107716 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
9 Hb_000347_040 0.1031821942 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
10 Hb_000934_110 0.1031994539 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
11 Hb_000107_340 0.1043606368 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
12 Hb_000363_060 0.1069690273 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_114310_070 0.1071709346 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
14 Hb_002600_070 0.108991061 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
15 Hb_003417_040 0.1099716899 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
16 Hb_001472_160 0.1100142308 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_001220_050 0.1101620526 - - DNA-damage-inducible protein f, putative [Ricinus communis]
18 Hb_005496_050 0.1106786041 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
19 Hb_002973_110 0.110689759 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000260_710 0.1115727128 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_110 Hb_000589_110 Hb_007769_040 Hb_007769_040 Hb_000589_110--Hb_007769_040 Hb_013405_080 Hb_013405_080 Hb_000589_110--Hb_013405_080 Hb_005250_010 Hb_005250_010 Hb_000589_110--Hb_005250_010 Hb_025477_050 Hb_025477_050 Hb_000589_110--Hb_025477_050 Hb_007192_090 Hb_007192_090 Hb_000589_110--Hb_007192_090 Hb_000555_020 Hb_000555_020 Hb_000589_110--Hb_000555_020 Hb_007769_040--Hb_025477_050 Hb_000345_370 Hb_000345_370 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_007769_040--Hb_013405_080 Hb_001220_050 Hb_001220_050 Hb_007769_040--Hb_001220_050 Hb_001660_120 Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_013405_080--Hb_005250_010 Hb_000033_110 Hb_000033_110 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_005250_010--Hb_000033_110 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_025477_050--Hb_000345_370 Hb_025477_050--Hb_001660_120 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_007192_090--Hb_025477_050 Hb_000107_340 Hb_000107_340 Hb_000555_020--Hb_000107_340 Hb_005235_070 Hb_005235_070 Hb_000555_020--Hb_005235_070 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_102948_010 Hb_102948_010 Hb_000555_020--Hb_102948_010 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.93807 7.06678 9.30044 7.35457 5.94619 7.46991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83305 4.96158 3.1353 3.14718 17.964

CAGE analysis