Hb_000589_120

Information

Type -
Description -
Location Contig589: 62590-66988
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21070g
description POPTRDRAFT_227475; hypothetical protein
nr
ID XP_012451707.1
description PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
swissprot
ID Q8L3X8
description Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1
trembl
ID A0A0D2SW68
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G201600 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich sc35-like splicing factor scl30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50071: 62589-66918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_120 0.0 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
2 Hb_000684_380 0.0591454358 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
3 Hb_014109_040 0.0598068262 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
4 Hb_008554_060 0.0609386308 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
5 Hb_007576_080 0.0630766375 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
6 Hb_000417_130 0.0713841396 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
7 Hb_000905_110 0.0743397252 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
8 Hb_033642_090 0.0778920076 - - conserved hypothetical protein [Ricinus communis]
9 Hb_123915_040 0.0785775676 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
10 Hb_004837_240 0.0786049201 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
11 Hb_001163_050 0.0798635859 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
12 Hb_001235_150 0.0801181593 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
13 Hb_002197_050 0.0810501758 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
14 Hb_000317_240 0.0812219261 - - PREDICTED: protein DYAD [Jatropha curcas]
15 Hb_003125_120 0.0814736338 - - PREDICTED: TITAN-like protein [Jatropha curcas]
16 Hb_000431_170 0.0822611438 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
17 Hb_001470_030 0.082744722 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
18 Hb_001357_250 0.0845616134 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
19 Hb_005697_060 0.0851809677 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
20 Hb_003780_030 0.0852213285 - - PREDICTED: protein CMSS1 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_120 Hb_000589_120 Hb_000684_380 Hb_000684_380 Hb_000589_120--Hb_000684_380 Hb_014109_040 Hb_014109_040 Hb_000589_120--Hb_014109_040 Hb_008554_060 Hb_008554_060 Hb_000589_120--Hb_008554_060 Hb_007576_080 Hb_007576_080 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_024958_010 Hb_024958_010 Hb_000684_380--Hb_024958_010 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_004058_030 Hb_004058_030 Hb_000684_380--Hb_004058_030 Hb_001359_050 Hb_001359_050 Hb_000684_380--Hb_001359_050 Hb_000331_550 Hb_000331_550 Hb_000684_380--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_014109_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_014109_040--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_000334_280 Hb_000334_280 Hb_014109_040--Hb_000334_280 Hb_003064_020 Hb_003064_020 Hb_008554_060--Hb_003064_020 Hb_000656_240 Hb_000656_240 Hb_008554_060--Hb_000656_240 Hb_002078_140 Hb_002078_140 Hb_008554_060--Hb_002078_140 Hb_000667_070 Hb_000667_070 Hb_008554_060--Hb_000667_070 Hb_001534_120 Hb_001534_120 Hb_008554_060--Hb_001534_120 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_123915_040 Hb_123915_040 Hb_000417_130--Hb_123915_040 Hb_001357_250 Hb_001357_250 Hb_000417_130--Hb_001357_250 Hb_001357_350 Hb_001357_350 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_063716_100 Hb_063716_100 Hb_000417_130--Hb_063716_100 Hb_000336_210 Hb_000336_210 Hb_000905_110--Hb_000336_210 Hb_008847_030 Hb_008847_030 Hb_000905_110--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_000905_110--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_000905_110--Hb_014834_150 Hb_000905_110--Hb_123915_040 Hb_021419_030 Hb_021419_030 Hb_000905_110--Hb_021419_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0887 34.7525 45.7358 32.4344 48.311 33.9039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.5911 73.7054 36.6663 53.9949 31.809

CAGE analysis