Hb_000589_130

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig589: 71039-79909
Sequence    

Annotation

kegg
ID cic:CICLE_v10030529mg
description hypothetical protein
nr
ID CBI35644.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID F6HA00
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01630 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50074: 71622-72298 , PASA_asmbl_50076: 73940-74250 , PASA_asmbl_50077: 74631-74821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_130 0.0 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
2 Hb_000022_180 0.1664682245 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
3 Hb_004648_100 0.1786614672 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
4 Hb_029393_020 0.1886618516 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
5 Hb_005147_040 0.1917793579 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
6 Hb_060909_010 0.2042075566 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
7 Hb_001251_070 0.2052928426 - - PREDICTED: probable aldo-keto reductase 2, partial [Populus euphratica]
8 Hb_000940_160 0.2078468936 - - hypothetical protein VITISV_017596 [Vitis vinifera]
9 Hb_008226_100 0.2078832501 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_009897_010 0.211788862 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_001625_010 0.2118649331 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
12 Hb_163658_010 0.2131383522 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_000866_370 0.2143082423 - - synaptotagmin, putative [Ricinus communis]
14 Hb_117895_010 0.2150381325 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
15 Hb_001544_080 0.2168177267 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
16 Hb_063480_020 0.2175142154 - - unnamed protein product [Vitis vinifera]
17 Hb_011716_110 0.2193220629 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
18 Hb_011310_200 0.2201196743 - - grr1, plant, putative [Ricinus communis]
19 Hb_000787_190 0.2208306274 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
20 Hb_001288_070 0.2210153967 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000589_130 Hb_000589_130 Hb_000022_180 Hb_000022_180 Hb_000589_130--Hb_000022_180 Hb_004648_100 Hb_004648_100 Hb_000589_130--Hb_004648_100 Hb_029393_020 Hb_029393_020 Hb_000589_130--Hb_029393_020 Hb_005147_040 Hb_005147_040 Hb_000589_130--Hb_005147_040 Hb_060909_010 Hb_060909_010 Hb_000589_130--Hb_060909_010 Hb_001251_070 Hb_001251_070 Hb_000589_130--Hb_001251_070 Hb_000645_240 Hb_000645_240 Hb_000022_180--Hb_000645_240 Hb_000789_240 Hb_000789_240 Hb_000022_180--Hb_000789_240 Hb_011861_080 Hb_011861_080 Hb_000022_180--Hb_011861_080 Hb_000866_370 Hb_000866_370 Hb_000022_180--Hb_000866_370 Hb_000866_090 Hb_000866_090 Hb_000022_180--Hb_000866_090 Hb_004108_170 Hb_004108_170 Hb_000022_180--Hb_004108_170 Hb_004648_100--Hb_060909_010 Hb_000544_020 Hb_000544_020 Hb_004648_100--Hb_000544_020 Hb_169620_010 Hb_169620_010 Hb_004648_100--Hb_169620_010 Hb_057079_020 Hb_057079_020 Hb_004648_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_004648_100--Hb_001410_010 Hb_011310_200 Hb_011310_200 Hb_004648_100--Hb_011310_200 Hb_029393_020--Hb_001251_070 Hb_147996_010 Hb_147996_010 Hb_029393_020--Hb_147996_010 Hb_006615_040 Hb_006615_040 Hb_029393_020--Hb_006615_040 Hb_000566_190 Hb_000566_190 Hb_029393_020--Hb_000566_190 Hb_007253_040 Hb_007253_040 Hb_029393_020--Hb_007253_040 Hb_020805_170 Hb_020805_170 Hb_005147_040--Hb_020805_170 Hb_000010_350 Hb_000010_350 Hb_005147_040--Hb_000010_350 Hb_000062_080 Hb_000062_080 Hb_005147_040--Hb_000062_080 Hb_001863_150 Hb_001863_150 Hb_005147_040--Hb_001863_150 Hb_000107_440 Hb_000107_440 Hb_005147_040--Hb_000107_440 Hb_005147_040--Hb_000645_240 Hb_001408_150 Hb_001408_150 Hb_060909_010--Hb_001408_150 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_000792_060 Hb_000792_060 Hb_001251_070--Hb_000792_060 Hb_001251_070--Hb_007253_040 Hb_010605_010 Hb_010605_010 Hb_001251_070--Hb_010605_010 Hb_000450_180 Hb_000450_180 Hb_001251_070--Hb_000450_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.362308 3.58685 0.437083 0.802245 0.0922714 1.75886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.141121 0.120311 0.443912 2.2441 0.554691

CAGE analysis