Hb_000589_150

Information

Type -
Description -
Location Contig589: 114138-116560
Sequence    

Annotation

kegg
ID bvg:104904229
description factor of DNA methylation 1-like
nr
ID XP_010690731.1
description PREDICTED: factor of DNA methylation 1-like isoform X1 [Beta vulgaris subsp. vulgaris]
swissprot
ID Q9S9P3
description Factor of DNA methylation 1 OS=Arabidopsis thaliana GN=FDM1 PE=1 SV=1
trembl
ID A0A068TXN3
description Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029903001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_150 0.0 - - PREDICTED: factor of DNA methylation 1-like isoform X1 [Beta vulgaris subsp. vulgaris]
2 Hb_001350_010 0.1269839792 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
3 Hb_000103_080 0.1272530792 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
4 Hb_003405_050 0.1293906082 - - -
5 Hb_028390_010 0.1340407617 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
6 Hb_000714_030 0.1351933532 - - Nucleosome assembly [Gossypium arboreum]
7 Hb_114343_010 0.1353098442 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
8 Hb_001234_080 0.1370428138 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
9 Hb_003746_040 0.1392187003 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
10 Hb_005618_160 0.1392583444 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
11 Hb_043302_010 0.1402797715 - - ADP,ATP carrier protein, putative [Ricinus communis]
12 Hb_012008_020 0.1413562199 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
13 Hb_002659_070 0.1417053207 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
14 Hb_000457_110 0.1431511033 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
15 Hb_001959_070 0.1435287062 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
16 Hb_000742_140 0.1439093866 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002495_040 0.1449445009 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
18 Hb_003010_030 0.145721947 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
19 Hb_000960_060 0.1465834337 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
20 Hb_089032_020 0.1473768141 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_000589_150 Hb_000589_150 Hb_001350_010 Hb_001350_010 Hb_000589_150--Hb_001350_010 Hb_000103_080 Hb_000103_080 Hb_000589_150--Hb_000103_080 Hb_003405_050 Hb_003405_050 Hb_000589_150--Hb_003405_050 Hb_028390_010 Hb_028390_010 Hb_000589_150--Hb_028390_010 Hb_000714_030 Hb_000714_030 Hb_000589_150--Hb_000714_030 Hb_114343_010 Hb_114343_010 Hb_000589_150--Hb_114343_010 Hb_004182_040 Hb_004182_040 Hb_001350_010--Hb_004182_040 Hb_003125_160 Hb_003125_160 Hb_001350_010--Hb_003125_160 Hb_000627_030 Hb_000627_030 Hb_001350_010--Hb_000627_030 Hb_000486_010 Hb_000486_010 Hb_001350_010--Hb_000486_010 Hb_000345_170 Hb_000345_170 Hb_001350_010--Hb_000345_170 Hb_007044_080 Hb_007044_080 Hb_001350_010--Hb_007044_080 Hb_008406_190 Hb_008406_190 Hb_000103_080--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_000103_080--Hb_003333_060 Hb_033594_120 Hb_033594_120 Hb_000103_080--Hb_033594_120 Hb_000272_020 Hb_000272_020 Hb_000103_080--Hb_000272_020 Hb_010423_040 Hb_010423_040 Hb_000103_080--Hb_010423_040 Hb_000960_060 Hb_000960_060 Hb_000103_080--Hb_000960_060 Hb_002067_020 Hb_002067_020 Hb_003405_050--Hb_002067_020 Hb_003405_050--Hb_001350_010 Hb_007380_090 Hb_007380_090 Hb_003405_050--Hb_007380_090 Hb_003405_050--Hb_114343_010 Hb_003363_010 Hb_003363_010 Hb_003405_050--Hb_003363_010 Hb_028390_010--Hb_007044_080 Hb_000982_160 Hb_000982_160 Hb_028390_010--Hb_000982_160 Hb_002527_030 Hb_002527_030 Hb_028390_010--Hb_002527_030 Hb_001689_020 Hb_001689_020 Hb_028390_010--Hb_001689_020 Hb_000933_090 Hb_000933_090 Hb_028390_010--Hb_000933_090 Hb_000645_050 Hb_000645_050 Hb_028390_010--Hb_000645_050 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000098_190 Hb_000098_190 Hb_000714_030--Hb_000098_190 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040 Hb_012008_020 Hb_012008_020 Hb_114343_010--Hb_012008_020 Hb_144598_030 Hb_144598_030 Hb_114343_010--Hb_144598_030 Hb_000373_240 Hb_000373_240 Hb_114343_010--Hb_000373_240 Hb_029921_040 Hb_029921_040 Hb_114343_010--Hb_029921_040 Hb_010691_060 Hb_010691_060 Hb_114343_010--Hb_010691_060 Hb_002391_300 Hb_002391_300 Hb_114343_010--Hb_002391_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25123 0.0639602 0.0558903 0.162471 0.317074 0.291934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219371 0.345047 0.0790444 0.0521182 0.175638

CAGE analysis