Hb_000589_170

Information

Type -
Description -
Location Contig589: 141120-146252
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20990g
description POPTRDRAFT_659670; hypothetical protein
nr
ID XP_012089039.1
description PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
swissprot
ID Q9C7B1
description Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1
trembl
ID A0A067LKS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01439 PE=4 SV=1
Gene Ontology
ID GO:0042162
description telomere repeat-binding protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50082: 141163-146268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_170 0.0 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
2 Hb_000098_180 0.084584844 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
3 Hb_015778_040 0.0885676387 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
4 Hb_001009_140 0.0964193668 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
5 Hb_023091_010 0.1078784405 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
6 Hb_013405_070 0.1084145606 - - ferric-chelate reductase, putative [Ricinus communis]
7 Hb_000979_140 0.1100429025 - - kinase family protein [Populus trichocarpa]
8 Hb_001587_040 0.1120228804 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
9 Hb_001729_020 0.1130280967 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
10 Hb_001155_050 0.1139172936 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
11 Hb_000310_120 0.1141868111 - - PREDICTED: probable transaldolase [Jatropha curcas]
12 Hb_002534_130 0.1141888157 - - membrane associated ring finger 1,8, putative [Ricinus communis]
13 Hb_005527_060 0.1148889636 - - malic enzyme, putative [Ricinus communis]
14 Hb_002432_050 0.1164539033 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
15 Hb_000757_130 0.1168690332 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011671_340 0.1184099368 - - small GTPase [Hevea brasiliensis]
17 Hb_002016_140 0.1184321099 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
18 Hb_006438_020 0.1187276526 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
19 Hb_012762_040 0.1193331121 - - big map kinase/bmk, putative [Ricinus communis]
20 Hb_003680_220 0.1197324822 - - hypothetical protein B456_002G243700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000589_170 Hb_000589_170 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010 Hb_001155_050 Hb_001155_050 Hb_015778_040--Hb_001155_050 Hb_002534_130 Hb_002534_130 Hb_015778_040--Hb_002534_130 Hb_001729_020 Hb_001729_020 Hb_015778_040--Hb_001729_020 Hb_002686_150 Hb_002686_150 Hb_015778_040--Hb_002686_150 Hb_015778_040--Hb_000098_180 Hb_005665_090 Hb_005665_090 Hb_001009_140--Hb_005665_090 Hb_101334_020 Hb_101334_020 Hb_001009_140--Hb_101334_020 Hb_000029_400 Hb_000029_400 Hb_001009_140--Hb_000029_400 Hb_006588_190 Hb_006588_190 Hb_001009_140--Hb_006588_190 Hb_000116_250 Hb_000116_250 Hb_001009_140--Hb_000116_250 Hb_001247_210 Hb_001247_210 Hb_023091_010--Hb_001247_210 Hb_008375_030 Hb_008375_030 Hb_023091_010--Hb_008375_030 Hb_023091_010--Hb_000979_140 Hb_004577_010 Hb_004577_010 Hb_023091_010--Hb_004577_010 Hb_002026_090 Hb_002026_090 Hb_023091_010--Hb_002026_090 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.73136 12.2918 33.1341 19.1909 1.46659 3.62861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62788 6.86939 4.39719 12.9765 17.3104

CAGE analysis