Hb_000589_180

Information

Type transcription factor
Description TF Family: GRAS
Location Contig589: 154282-156528
Sequence    

Annotation

kegg
ID rcu:RCOM_0039810
description hypothetical protein
nr
ID XP_012088986.1
description PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
swissprot
ID O80933
description Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1
trembl
ID A0A067LCG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01438 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50083: 154958-155183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_180 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
2 Hb_003430_020 0.1138327162 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
3 Hb_002007_140 0.117980279 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
4 Hb_000086_370 0.1206835472 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
5 Hb_009581_050 0.124488796 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
6 Hb_002475_100 0.1246567273 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
7 Hb_000000_060 0.1264939776 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
8 Hb_004044_030 0.1276986901 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
9 Hb_001104_280 0.1286211033 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
10 Hb_000657_030 0.1352720256 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
11 Hb_002173_060 0.1359596219 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
12 Hb_000045_180 0.1381386465 - - aquaporin PIP1 [Hevea brasiliensis]
13 Hb_005489_160 0.1404518793 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
14 Hb_012807_060 0.141398731 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_001838_010 0.1434670154 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
16 Hb_004195_170 0.1447114203 - - ATP binding protein, putative [Ricinus communis]
17 Hb_017866_020 0.1448362819 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
18 Hb_164010_090 0.1454901231 - - cellulose synthase, putative [Ricinus communis]
19 Hb_000255_020 0.147098799 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
20 Hb_003453_030 0.1497245141 - - hypothetical protein JCGZ_26893 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_180 Hb_000589_180 Hb_003430_020 Hb_003430_020 Hb_000589_180--Hb_003430_020 Hb_002007_140 Hb_002007_140 Hb_000589_180--Hb_002007_140 Hb_000086_370 Hb_000086_370 Hb_000589_180--Hb_000086_370 Hb_009581_050 Hb_009581_050 Hb_000589_180--Hb_009581_050 Hb_002475_100 Hb_002475_100 Hb_000589_180--Hb_002475_100 Hb_000000_060 Hb_000000_060 Hb_000589_180--Hb_000000_060 Hb_009581_040 Hb_009581_040 Hb_003430_020--Hb_009581_040 Hb_134017_010 Hb_134017_010 Hb_003430_020--Hb_134017_010 Hb_003430_020--Hb_009581_050 Hb_003439_090 Hb_003439_090 Hb_003430_020--Hb_003439_090 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_012807_060 Hb_012807_060 Hb_003430_020--Hb_012807_060 Hb_002007_140--Hb_009581_050 Hb_003807_020 Hb_003807_020 Hb_002007_140--Hb_003807_020 Hb_012753_200 Hb_012753_200 Hb_002007_140--Hb_012753_200 Hb_019229_020 Hb_019229_020 Hb_002007_140--Hb_019229_020 Hb_017866_020 Hb_017866_020 Hb_002007_140--Hb_017866_020 Hb_000335_050 Hb_000335_050 Hb_002007_140--Hb_000335_050 Hb_000657_030 Hb_000657_030 Hb_000086_370--Hb_000657_030 Hb_000521_300 Hb_000521_300 Hb_000086_370--Hb_000521_300 Hb_004195_170 Hb_004195_170 Hb_000086_370--Hb_004195_170 Hb_000120_980 Hb_000120_980 Hb_000086_370--Hb_000120_980 Hb_000086_370--Hb_012807_060 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_009581_050--Hb_012807_060 Hb_009581_050--Hb_003807_020 Hb_009581_050--Hb_000335_050 Hb_005489_160 Hb_005489_160 Hb_002475_100--Hb_005489_160 Hb_002475_100--Hb_000120_980 Hb_005333_100 Hb_005333_100 Hb_002475_100--Hb_005333_100 Hb_001838_010 Hb_001838_010 Hb_002475_100--Hb_001838_010 Hb_002475_100--Hb_000086_370 Hb_001104_280 Hb_001104_280 Hb_000000_060--Hb_001104_280 Hb_000000_060--Hb_019229_020 Hb_001638_110 Hb_001638_110 Hb_000000_060--Hb_001638_110 Hb_000000_060--Hb_002007_140 Hb_094637_010 Hb_094637_010 Hb_000000_060--Hb_094637_010 Hb_000045_180 Hb_000045_180 Hb_000000_060--Hb_000045_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0674522 8.18578 0.351432 2.80896 0.0256835 0.0166028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218339 0.140566 0 8.38603 1.15897

CAGE analysis